iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.50e-07	32.3	441	468

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 9    laf...sd.tllvsGsdDgtikvWDlrt 32
           +++    + ++l++G++Dgt+ +W ++t
   Q: 441  VEWstlGNpDFLLAGCHDGTVALWKFST 468
           68888834499*************9766 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MDGEECNISL FDYSAESHLK AVESITDLCG EANADIDEND INILSSSVTF LREWRHYNFE 60
PKSFAFYNEA EKNHQPKDIN SQTLPQFSSA RAPKVKIHDD ESSSSGEISK DFVMHVGGSV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AATATATCAA AGAGTTTGTA CCCGCCTTCG CCGCAACCGT CGTTCCTGTC GCCGGTAAAT 60
TCTGTTCCTC GGTTCTCTTC TTTGCTAGAT CTCTTTTTCT CTGTTTTGAC TTTTTTCCTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR017956--AT_hook_DNA-bd_motif
IPR000637--HMGI/Y_DNA-bd_CS
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS00354--HMGI_Y

Pfam

PF02178--AT_hook

PRINTS

PR00929--ATHOOK

SMART

SM00384--AT_hook
SM00320--WD40

Gene Ontology

GO:0003677--F:DNA binding
GO:0006355--P:regulation of transcription, DNA-templated

KEGG

ath:AT1G19485

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000091	Aegilops tauschii	46.40	5.00e-119	422.00
IUUC-Aml-001488	Ailuropoda melanoleuca	22.02	6.00e-06	45.80
IUUC-Apl-003185	Anas platyrhynchos	26.29	2.00e-11	63.90
IUUC-Aca-005245	Anolis carolinensis	24.51	7.00e-09	55.80
IUUC-Ame-010654	Astyanax mexicanus	24.12	2.00e-09	57.40
IUUC-Bta-012551	Bos taurus	24.03	8.00e-06	45.40
IUUC-Bdi-014228	Brachypodium distachyon	47.33	2.00e-119	423.00
IUUC-Bol-015619	Brassica oleracea	79.29	0.00e+00	1234.00
IUUC-Bra-017820	Brassica rapa	80.54	0.00e+00	1251.00
IUUC-Cja-019727	Callithrix jacchus	22.05	1.00e-05	45.10
IUUC-Cfa-020469	Canis familiaris	22.02	6.00e-06	45.80
IUUC-Cpo-021854	Cavia porcellus	21.95	3.00e-05	43.50
IUUC-Csa-023726	Chlorocebus sabaeus	22.12	7.00e-06	45.80
IUUC-Cho-024296	Choloepus hoffmanni	25.19	3.00e-05	43.90
IUUC-Dre-028735	Danio rerio	25.37	1.00e-11	65.10
IUUC-Dno-028895	Dasypus novemcinctus	23.28	2.00e-05	44.30
IUUC-Dor-030617	Dipodomys ordii	22.26	2.00e-08	54.30
IUUC-Eca-033420	Equus caballus	22.26	3.00e-05	43.50
IUUC-Fca-035603	Felis catus	22.26	1.00e-06	48.10
IUUC-Fal-037637	Ficedula albicollis	24.55	5.00e-09	55.80
IUUC-Gga-040991	Gallus gallus	25.42	7.00e-11	62.40
IUUC-Ggo-045595	Gorilla gorilla	22.12	6.00e-06	45.80
IUUC-Hsa-046196	Homo sapiens	22.12	6.00e-06	45.80
IUUC-Hvu-047758	Hordeum vulgare	45.16	4.00e-119	422.00
IUUC-Itr-048222	Ictidomys tridecemlineatus	22.02	8.00e-06	45.40
IUUC-Lch-050384	Latimeria chalumnae	26.44	7.00e-11	62.00
IUUC-Lpe-050995	Leersia perrieri	42.58	1.00e-99	357.00
IUUC-Loc-052778	Lepisosteus oculatus	27.40	6.00e-14	72.80
IUUC-Laf-054474	Loxodonta africana	23.25	1.00e-05	45.40
IUUC-Mcc-055795	Macaca mulatta	22.05	5.00e-06	46.20
IUUC-Mmr-061702	Microcebus murinus	21.95	2.00e-06	47.40
IUUC-Mdo-063012	Monodelphis domestica	28.15	2.00e-07	50.80
IUUC-Mmu-063858	Mus musculus	23.35	5.00e-06	46.20
IUUC-Mlu-067530	Myotis lucifugus	21.95	5.00e-06	46.20
IUUC-Nle-069278	Nomascus leucogenys	22.12	7.00e-06	45.80
IUUC-Opr-070222	Ochotona princeps	22.36	7.00e-06	45.80
IUUC-Ont-071367	Oreochromis niloticus	26.57	3.00e-07	50.40
IUUC-Oan-073357	Ornithorhynchus anatinus	30.70	1.00e-06	47.40
IUUC-Ocu-074887	Oryctolagus cuniculus	21.92	3.00e-05	43.50
IUUC-Obr-076376	Oryza brachyantha	42.22	6.00e-99	354.00
IUUC-Ogl-077258	Oryza glaberrima	40.82	3.00e-120	426.00
IUUC-Ogu-078002	Oryza glumaepatula	43.05	8.00e-89	320.00
IUUC-Oin-079689	Oryza indica	40.82	1.00e-119	423.00
IUUC-Olo-080486	Oryza longistaminata	31.91	9.00e-59	221.00
IUUC-Oni-082369	Oryza nivara	40.15	2.00e-117	416.00
IUUC-Opu-083230	Oryza punctata	47.41	5.00e-120	425.00
IUUC-Osa-085403	Oryza sativa	41.94	5.00e-102	365.00
IUUC-Oga-088051	Otolemur garnettii	23.48	9.00e-06	45.40
IUUC-Oar-090076	Ovis aries	23.91	4.00e-06	46.20
IUUC-Ptr-091503	Pan troglodytes	22.52	5.00e-06	45.80
IUUC-Pan-092123	Papio anubis	22.12	7.00e-06	45.80
IUUC-Psi-094020	Pelodiscus sinensis	22.79	2.00e-11	63.90
IUUC-Ppa-095644	Physcomitrella patens	36.62	3.00e-76	278.00
IUUC-Pfo-097023	Poecilia formosa	25.16	1.00e-07	52.00
IUUC-Pab-097532	Pongo abelii	22.12	6.00e-06	45.80
IUUC-Pop-099342	Populus trichocarpa	50.00	0.00e+00	735.00
IUUC-Ppe-101268	Prunus persica	44.89	2.00e-175	609.00
IUUC-Pva-102403	Pteropus vampyrus	22.46	2.00e-06	47.40
IUUC-Rno-105329	Rattus norvegicus	23.73	2.00e-05	44.70
IUUC-Sha-106857	Sarcophilus harrisii	27.94	6.00e-07	49.30
IUUC-Sit-110532	Setaria italica	56.04	3.00e-88	319.00
IUUC-Sly-110922	Solanum lycopersicum	38.84	8.00e-165	573.00
IUUC-Sbi-114680	Sorghum bicolor	44.82	9.00e-114	404.00
IUUC-Tgu-117058	Taeniopygia guttata	28.23	1.00e-05	43.50
IUUC-Tru-118675	Takifugu rubripes	26.44	1.00e-09	58.20
IUUC-Tae-124395	Triticum aestivum	46.03	9.00e-121	427.00
IUUC-Tur-126862	Triticum urartu	44.47	5.00e-120	425.00
IUUC-Tbe-127727	Tupaia belangeri	26.47	2.00e-05	44.30
IUUC-Ttr-128425	Tursiops truncatus	23.14	2.00e-05	43.90
IUUC-Vpa-130050	Vicugna pacos	21.95	9.00e-06	45.40
IUUC-Vvi-131706	Vitis vinifera	49.02	4.00e-159	555.00
IUUC-Xtr-132178	Xenopus tropicalis	26.43	2.00e-11	63.90

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence