iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Sbi-113848

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000762

Gene Name

SORBI_003G214600

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb03g027380	Sb03g027380.1	Sb03g027380.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.20e-21	74.9	650	676
UBD/Beta-Prp	2.70e-43	149.1	606	890

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 5    svtclaf.sd.tllvsGsdDgtikvWD 29
            +t+++f ++  +l+++s D+t++vWD
   Q: 650  LITDVRFsPSmSRLATSSFDKTVRVWD 676
           699*****66799************** PP

UBD/Beta-Prp

   S: 9    hksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgk.cvhtlkghedsvlslsfs 103
            ++v++  +fs d++llatg+ d+++++w +++ k  + l++h+  +t+v+fsp+ + l+t+s D+t++vwd ++ +  ++t++gh++sv+sl+f+
   Q: 606  ATKVVC-CHFSADGKLLATGGHDKKVTLWCTDSLKPKSYLEEHSFLITDVRFSPSMSRLATSSFDKTVRVWDADNTDySLRTFTGHSASVMSLDFH 700
           455555.7899**********************999999**********************************96662699*************** PP
   S: 104  psg.dklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvs 197
           p++ d + s ++d  +r w +++g+cl  + ++ +g  + ++++p + ++l+++s  +++ + d +t+   r   +gh + ++sl +ds g++l+s
   Q: 701  PNKeDMICSCDSDGEVRSWSINNGSCLT-CVKVFKGGATQMRFQPRKgKYLAAAS-EKVIYILDGETQLACRSPLQGHGKNIQSLCWDSAGEYLAS 794
           *888***********************9.77777777777777777745554444.5777777777776665554447777777777777777777 PP
   S: 198  gsldgtvklwdlq...tgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvavlsfgdnvlvlgsedskvn 290
           +s+d +v++w+++    ge v++ln   +++ s  f+p  + l++ ++ +s+ +Wd+r ++++ t++ h   v + a+ s    +++++s d +++
   Q: 795  VSED-SVRIWSFSsgrDGEFVHELNRSGNQFHSCVFHPTYQSLLVIGCYESLELWDIRDKNTM-TFNAHDGLVAALAA-SSATGKVASVSHDRTLK 887
           7777.4777777766666677777777777777777777777777777777777777655544.56777767777777.44455566777777777 PP
   S: 291  iwk 293
           +wk
   Q: 888  LWK 890
           775 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MSQTNWEADK MLDVYIYDYF MKRNLQATAK AFQAEGKVSS DPVAIDAPGG FLFEWWSVFW 60
DIFIARTNEK HSDVAASYIE TQLMKAREQQ QQQTPQQRQQ QPQHIQMQQM LLQRAVHQQQ 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTCATACATT CGACATTCCC CTCCCCCCTC TCCCTCCCCT CGTCCCGTCC CGCTCCCGCC 60
GCTGTAGCCG CGATTCCAAT CTGCCCTCCC CTCCGCCGCT CACCGCCGCG TTCAGGCCGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR006594--LisH
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50896--LISH
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08513--LisH
PF00400--WD40

SMART

SM00667--LisH
SM00320--WD40

KEGG

sbi:SORBI_03g027380

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000855	Aegilops tauschii	81.90	0.00e+00	1014.00
IUUC-Atr-002973	Amborella trichopoda	62.82	0.00e+00	723.00
IUUC-Aly-006446	Arabidopsis lyrata	59.29	0.00e+00	745.00
IUUC-Ath-006594	Arabidopsis thaliana	56.09	0.00e+00	729.00
IUUC-Bdi-015034	Brachypodium distachyon	84.05	0.00e+00	1072.00
IUUC-Bol-015720	Brassica oleracea	59.63	0.00e+00	722.00
IUUC-Bra-017481	Brassica rapa	59.73	0.00e+00	742.00
IUUC-Gma-043858	Glycine max	71.33	5.00e-163	567.00
IUUC-Hvu-047773	Hordeum vulgare	87.94	0.00e+00	672.00
IUUC-Lpe-051536	Leersia perrieri	83.36	0.00e+00	1065.00
IUUC-Mtr-058613	Medicago truncatula	67.64	1.00e-158	552.00
IUUC-Mac-064770	Musa acuminata	61.52	0.00e+00	764.00
IUUC-Oba-075753	Oryza barthii	77.90	0.00e+00	857.00
IUUC-Obr-076415	Oryza brachyantha	83.70	0.00e+00	1043.00
IUUC-Ogl-077031	Oryza glaberrima	84.38	0.00e+00	1028.00
IUUC-Ogu-078070	Oryza glumaepatula	77.79	0.00e+00	859.00
IUUC-Oin-079642	Oryza indica	84.51	0.00e+00	1029.00
IUUC-Olo-080338	Oryza longistaminata	83.87	0.00e+00	914.00
IUUC-Ome-081901	Oryza meridionalis	83.83	0.00e+00	1004.00
IUUC-Oni-082450	Oryza nivara	77.79	0.00e+00	859.00
IUUC-Opu-083133	Oryza punctata	76.06	2.00e-153	535.00
IUUC-Oru-085189	Oryza rufipogon	77.69	0.00e+00	897.00
IUUC-Osa-085738	Oryza sativa	84.38	0.00e+00	1027.00
IUUC-Pop-098994	Populus trichocarpa	63.04	0.00e+00	780.00
IUUC-Ppe-102018	Prunus persica	61.16	0.00e+00	759.00
IUUC-Sit-109866	Setaria italica	90.79	0.00e+00	1129.00
IUUC-Sly-110921	Solanum lycopersicum	61.08	0.00e+00	742.00
IUUC-Tca-121720	Theobroma cacao	69.50	1.00e-161	563.00
IUUC-Tae-125267	Triticum aestivum	83.49	0.00e+00	1056.00
IUUC-Tur-126743	Triticum urartu	66.28	0.00e+00	820.00
IUUC-Vvi-131473	Vitis vinifera	62.40	0.00e+00	789.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence