iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Gma-044085

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

RING-type E3 ubiquitin transferase

Genbank Nucleotide ID

CM000838

Gene Name

GLYMA_05G229600

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
GLYMA05G35600	GLYMA05G35600.1	GLYMA05G35600.1
GLYMA05G35600	GLYMA05G35600.4	GLYMA05G35600.4

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.00e-10	43.0	1106	1132
E3 activity/RING/U-box	9.90e-26	91.2	445	516

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 6    vtc.lafsdtllvsGsdDgtikvWDlrt 32
           v + ++f  + + sG  DgtikvW l++
   Q: 1106 VLSvICFK-DKFFSGHTDGTIKVWTLKD 1132
           55624673.589************8765 PP

E3 activity/RING/U-box

   S: 3    peeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedl.vPnltlrrliqawceens 73
           p++f+CpI+  ++ dPv+l++G+ty+r++Ie+w+++g+ tcP+trq+l++++l + n++l+rli +w ++n 
   Q: 445  PKDFVCPITSYIFDDPVTLETGQTYERKAIEEWFNRGNLTCPITRQKLQNTQLpKTNYVLKRLIASWKDRNP 516
           99*****************************************************************99985 PP

Organism

Glycine max

Protein Sequence
(Fasta)

MARAKQGSHW SFQKLPSESS NSGKLNPITV TSYSYTPRTD QSFTHSPATM TTVTVTTRAQ 60
ILRHTAAFTS SVLSQSELRR RLIATLLRDT PLSDQKHLNL AADTLESAIS FSSPPTRSSS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TATAAGAGGT TCCATTTGAT TCAAAACTCA GTAATTTTTT GCAGTGAAAT ACAAGGGTCA 60
CATTGGTAAA GTAAAGCATT TTTATACTAA AACATGGCAA GAGCAAAACA AGGGTCACAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase
KW-0853--WD repeat

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR003613--Ubox_domain
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51698--U_BOX
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04564--U-box

SMART

SM00504--Ubox
SM00320--WD40

Gene Ontology

GO:0004842--F:ubiquitin-protein transferase activity

KEGG

gmx:100787950

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000289	Aegilops tauschii	49.04	0.00e+00	897.00
IUUC-Atr-002936	Amborella trichopoda	48.83	0.00e+00	967.00
IUUC-Afl-008619	Aspergillus flavus	22.07	5.00e-08	53.50
IUUC-Aor-010088	Aspergillus oryzae	22.19	7.00e-08	53.10
IUUC-Bdi-014680	Brachypodium distachyon	49.70	0.00e+00	931.00
IUUC-Obr-076347	Oryza brachyantha	49.85	0.00e+00	887.00
IUUC-Ogl-077695	Oryza glaberrima	50.10	0.00e+00	798.00
IUUC-Ogu-078873	Oryza glumaepatula	50.05	0.00e+00	820.00
IUUC-Oin-079745	Oryza indica	51.49	5.00e-135	475.00
IUUC-Olo-081050	Oryza longistaminata	47.93	3.00e-128	452.00
IUUC-Ome-081604	Oryza meridionalis	48.72	0.00e+00	816.00
IUUC-Oni-082155	Oryza nivara	48.72	0.00e+00	796.00
IUUC-Opu-083775	Oryza punctata	46.38	0.00e+00	729.00
IUUC-Oru-084628	Oryza rufipogon	47.06	0.00e+00	783.00
IUUC-Osa-086224	Oryza sativa	48.54	1.00e-85	310.00
IUUC-Pop-099122	Populus trichocarpa	60.82	0.00e+00	951.00
IUUC-Sit-110152	Setaria italica	50.31	0.00e+00	936.00
IUUC-Sly-111919	Solanum lycopersicum	55.93	0.00e+00	1166.00
IUUC-Sbi-114464	Sorghum bicolor	42.58	0.00e+00	968.00
IUUC-Tae-123295	Triticum aestivum	44.77	0.00e+00	960.00
IUUC-Tur-126163	Triticum urartu	47.78	0.00e+00	717.00
IUUC-Vvi-131144	Vitis vinifera	62.92	0.00e+00	1421.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence