iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099122

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

RING-type E3 ubiquitin transferase

Genbank Nucleotide ID

CM000354

Gene Name

POPTRDRAFT_578493; POPTR_0018s09040g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0018s09040	POPTR_0018s09040.1	POPTR_0018s09040.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	2.10e-26	92.9	86	158
E3 adaptor/Cullin RING/DCX/DWD	2.20e-11	44.6	789	818

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedl.vPnltlrrliqawceens 73
           +p++f+CpI+  ++ dPv+l++G+ty+r++I++wl++g++tcP+trq+l  ++l + n++l+rli +w e+n 
   Q: 86   PPKDFVCPITSHIFDDPVTLETGQTYERRAIQEWLERGNSTCPITRQKLNCTQLpKTNYVLKRLIASWKEQNP 158
           79*******************************************************************9986 PP

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sdtllvsGsdDgtikvWD 29
           Ht  vt+la   ++  l sGs D t +vW+
   Q: 789  HTKAVTSLAVlqPGEKLYSGSLDRTARVWS 818
           999******7798899*************9 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MWTEGERSVD FLSFIGASKS KYSSPSYPRR VSPETIKNIS CRRSTAFPTS LNSDSEPELS 60
LEDNMASSEH SMADTDSSPG GGKHTPPKDF VCPITSHIFD DPVTLETGQT YERRAIQEWL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GTTTAGGGAA ATTCCATCTT TAGGTAAGCC TCCTGTATGC AAATTTTTGT GAATACAGTA 60
TGGTCGTTAT TTTCTGGATT TTTTGAATTA TCCAGGCTCC AATTTGCAGA AAATGGTCTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase
KW-0853--WD repeat

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR003613--Ubox_domain
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51698--U_BOX
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04564--U-box
PF00400--WD40

SMART

SM00504--Ubox
SM00320--WD40

Gene Ontology

GO:0004842--F:ubiquitin-protein transferase activity

KEGG

pop:POPTR_0018s09040g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000289	Aegilops tauschii	51.10	0.00e+00	768.00
IUUC-Bdi-014680	Brachypodium distachyon	48.98	0.00e+00	764.00
IUUC-Gma-044085	Glycine max	60.82	0.00e+00	949.00
IUUC-Hvu-047711	Hordeum vulgare	53.03	4.00e-108	384.00
IUUC-Lpe-051224	Leersia perrieri	46.17	0.00e+00	659.00
IUUC-Mtr-058452	Medicago truncatula	56.73	0.00e+00	964.00
IUUC-Mac-064685	Musa acuminata	59.34	0.00e+00	887.00
IUUC-Obr-076347	Oryza brachyantha	52.07	0.00e+00	760.00
IUUC-Ogl-077695	Oryza glaberrima	49.94	0.00e+00	681.00
IUUC-Ogu-078873	Oryza glumaepatula	49.83	0.00e+00	679.00
IUUC-Oin-079745	Oryza indica	53.12	7.00e-99	354.00
IUUC-Ome-081604	Oryza meridionalis	48.24	0.00e+00	686.00
IUUC-Oni-082155	Oryza nivara	49.61	0.00e+00	679.00
IUUC-Oru-084628	Oryza rufipogon	47.80	0.00e+00	663.00
IUUC-Osa-086224	Oryza sativa	52.45	4.00e-89	321.00
IUUC-Ppe-101249	Prunus persica	68.86	0.00e+00	1018.00
IUUC-Sit-110152	Setaria italica	50.62	0.00e+00	793.00
IUUC-Sly-111919	Solanum lycopersicum	59.90	0.00e+00	904.00
IUUC-Stu-111946	Solanum tuberosum	61.58	0.00e+00	942.00
IUUC-Sbi-114464	Sorghum bicolor	47.91	0.00e+00	772.00
IUUC-Tca-121369	Theobroma cacao	69.85	0.00e+00	1088.00
IUUC-Tae-123295	Triticum aestivum	51.74	0.00e+00	779.00
IUUC-Tur-126163	Triticum urartu	50.14	7.00e-170	590.00
IUUC-Vvi-131144	Vitis vinifera	71.63	0.00e+00	1101.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence