iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
TRANSFAC
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	9.00e-12	45.7	321	357

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.......sd..tllvsGsdDgtikvW 28
           +H+++v+ +++       s+    lv+Gs Dg++k+W
   Q: 321  THSSWVSTMSWgifgcdsSNpqVVLVTGSCDGSVKIW 357
           5**************9974334669************ PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MASRFQEASL VTSPSYPNAV AWSSENLIAV AAGHLVIIIN PALPTGPRGL ITISDAELYQ 60
IGRVRSQDLL TGGLLPSSLK RERSPCVRSL SWSEIGMSPN HGCLLAVCTA EGRVKLYRPP 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AAATAATTGA GGATCTGATC TGCGTCACTG CGATTCGAAC TAGGGTTTCC GTACTGAATC 60
AACTTCATCA GTTCGTTTCG TTGTCAAAAG CAAAGCAGAG CAAGTTTTAT TTTCCCTCCA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR024761--TFIIIC_delta_N
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF12657--TFIIIC_delta
PF00400--WD40

SMART

SM00320--WD40

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-003046	Amborella trichopoda	40.19	5.00e-96	345.00
IUUC-Aly-005715	Arabidopsis lyrata	93.84	0.00e+00	1531.00
IUUC-Bdi-014902	Brachypodium distachyon	37.57	3.00e-152	531.00
IUUC-Bol-016169	Brassica oleracea	80.85	0.00e+00	1075.00
IUUC-Bra-017736	Brassica rapa	80.80	0.00e+00	1347.00
IUUC-Gma-044065	Glycine max	43.69	0.00e+00	671.00
IUUC-Mtr-057870	Medicago truncatula	42.49	0.00e+00	679.00
IUUC-Mac-065235	Musa acuminata	46.88	6.00e-95	341.00
IUUC-Ogl-077286	Oryza glaberrima	35.38	3.00e-152	531.00
IUUC-Oin-079863	Oryza indica	37.15	3.00e-114	405.00
IUUC-Oru-084242	Oryza rufipogon	35.22	2.00e-101	362.00
IUUC-Osa-085660	Oryza sativa	37.11	6.00e-114	404.00
IUUC-Ppa-095823	Physcomitrella patens	34.05	1.00e-88	320.00
IUUC-Pop-098900	Populus trichocarpa	48.20	0.00e+00	821.00
IUUC-Ppe-101763	Prunus persica	49.56	0.00e+00	766.00
IUUC-Smo-108757	Selaginella moellendorffii	31.72	6.00e-73	268.00
IUUC-Sit-110507	Setaria italica	39.07	4.00e-161	561.00
IUUC-Sly-111401	Solanum lycopersicum	44.41	2.00e-137	482.00
IUUC-Stu-112879	Solanum tuberosum	42.97	3.00e-103	368.00
IUUC-Tca-121440	Theobroma cacao	48.71	0.00e+00	823.00
IUUC-Tae-125429	Triticum aestivum	37.93	6.00e-102	364.00
IUUC-Vvi-131537	Vitis vinifera	50.73	2.00e-160	558.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence