iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sbi-114323

Ensembl Protein ID

Sb03g045600.1

UniProt Accession

C5XHT2; C5XHT2_SORBI

Genbank Protein ID

EES02040.1

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000762

Gene Name

SORBI_003G423000

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb03g045600	Sb03g045600.1	Sb03g045600.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.90e-21	75.1	195	230
UBD/Beta-Prp	6.30e-42	144.6	131	428

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    HtdsvtclafsdtllvsGsdDgtikvWDlrtgvllk 37
           H+ds++cla +d  l sGs+D t+kvW++ + ++l 
   Q: 195  HADSISCLAVHDAVLYSGSWDRTLKVWRIADLKCLE 230
           9********966789*************99999985 PP

UBD/Beta-Prp

   S: 21   dksllatgsrdgtikvwdvttgkl.................................lrsl.sgheaevtavkfspdgkilvtgseDrtikvwdls 82
            +  ++++ +dg+++vw+v++ +                                   r+l  +h + ++++  ++   +l +gs Drt+kvw + 
   Q: 131  AGGRVFSAHQDGRVRVWRVSRRSRsenafklvaalptardylgrvfrqasyvqtrrnHRRLwIEHADSISCLAVHDA--VLYSGSWDRTLKVWRIA 224
           566689999************9999**************************99999999999999999********9..9**************** PP
   S: 83   tgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqclee.tlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdlktgkllrtl. 175
           + kc+ ++++h+d v +++ ++   ++ s+s+d  ++ w+  +   + + +l  +dgv + +   + + + + +++ D+ v  Wd   g+   ++ 
   Q: 225  DLKCLESIRAHDDAVNAVAADA--GVVYSASADGRVKAWEKGKAAHFLQgVLVARDGVSWNALAVSAAdRRVYAAGSDGHVAGWDRLGGRTAARWs 318
           **********************..***************99999998889888888877665555555588888888******************9 PP
   S: 176  .....tgghtdsvyslsfdsngkelvsgsldgtvklwdlqtgec...vrtlnghtdnvksvrfs....pnderlvsgssDgsiriW.......... 249
                + +h+ +v sl + ++   l +gs d+t+ lw  q+g     v  + gh+ +vk++++s    +n+  ++sgs D++ir+W          
   Q: 319  lacdvK-AHDMAVLSLCVVRD--LLCTGSADKTIGLWRRQSGGElakVGVVGGHEGPVKCIQASwcrlSNGCMVYSGSLDKTIRVWwvpgalqdgn 411
           999955.5*********9995..8****************554334499999***********99*99*****************99***999999 PP
   S: 250  dlrsgdllktlqlhnss 266
           d + ++  k+++ +n++
   Q: 412  DHQEQQQEKSFKDQNQN 428
           99999999999998865 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MMTMPDADRA AMTAPLLPRP AYLTASLSSS SFASFNSSSS SSSTTSTTTS SSPSPHAFPP 60
HAMPQPQGPC KALAVLRDHA GSVSSLSLCG EFLLNASTGG DIVAWQQPDL RRFARFGHGE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGATGACAA TGCCGGACGC GGACCGCGCG GCCATGACGG CGCCGCTGCT CCCACGGCCC 60
GCGTACCTGA CAGCCTCCCT CTCCTCCTCT TCCTTCGCGT CCTTCAACTC CTCCTCTTCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR027295--Quinoprotein_ADH-like_fam
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

KEGG

sbi:SORBI_03g045600

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002847	Amborella trichopoda	54.03	8.00e-93	332.00
IUUC-Aly-005620	Arabidopsis lyrata	55.53	7.00e-104	369.00
IUUC-Ath-006729	Arabidopsis thaliana	54.11	6.00e-102	363.00
IUUC-Bdi-014229	Brachypodium distachyon	75.06	1.00e-126	445.00
IUUC-Bol-015324	Brassica oleracea	53.12	3.00e-98	350.00
IUUC-Bra-017033	Brassica rapa	53.85	2.00e-103	368.00
IUUC-Gma-043773	Glycine max	57.06	3.00e-104	370.00
IUUC-Hvu-047162	Hordeum vulgare	71.38	2.00e-92	331.00
IUUC-Lpe-050845	Leersia perrieri	74.42	3.00e-126	444.00
IUUC-Mtr-058525	Medicago truncatula	58.79	1.00e-104	372.00
IUUC-Mac-064928	Musa acuminata	52.37	4.00e-79	287.00
IUUC-Oba-075989	Oryza barthii	71.24	1.00e-151	528.00
IUUC-Obr-076522	Oryza brachyantha	73.79	2.00e-149	521.00
IUUC-Ogl-077747	Oryza glaberrima	70.44	3.00e-150	523.00
IUUC-Ogu-078306	Oryza glumaepatula	73.80	1.00e-146	511.00
IUUC-Oin-079397	Oryza indica	68.89	1.00e-146	512.00
IUUC-Olo-080627	Oryza longistaminata	70.42	2.00e-93	334.00
IUUC-Ome-081295	Oryza meridionalis	68.67	6.00e-146	509.00
IUUC-Oni-082259	Oryza nivara	70.44	3.00e-150	523.00
IUUC-Opu-083686	Oryza punctata	74.39	4.00e-148	516.00
IUUC-Oru-084598	Oryza rufipogon	68.89	1.00e-146	512.00
IUUC-Osa-085705	Oryza sativa	70.44	9.00e-146	508.00
IUUC-Pop-099519	Populus trichocarpa	57.61	7.00e-105	373.00
IUUC-Ppe-101179	Prunus persica	55.01	2.00e-107	381.00
IUUC-Sit-109966	Setaria italica	79.41	6.00e-165	572.00
IUUC-Sly-111222	Solanum lycopersicum	53.52	4.00e-96	343.00
IUUC-Stu-112315	Solanum tuberosum	55.33	1.00e-104	372.00
IUUC-Tca-121448	Theobroma cacao	55.25	1.00e-109	389.00
IUUC-Tae-123437	Triticum aestivum	73.90	2.00e-129	455.00
IUUC-Vvi-131470	Vitis vinifera	58.81	2.00e-106	378.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence