iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sbi-114483

Ensembl Protein ID

Sb01g000300.1

UniProt Accession

A0A1B6QGQ1; A0A1B6QGQ1_SORBI

Genbank Protein ID

KXG37070.1

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000760

Gene Name

SORBI_001G001900

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb01g000300	Sb01g000300.1	Sb01g000300.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.80e-25	88.1	651	688
UBD/Beta-Prp	1.00e-41	143.9	616	762

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sdtllvsGsdDgtikvWDlrtgvllk 37
           gH+++v+c+++  ++ +l+s s D t+kvW++++gv+ +
   Q: 651  GHNSEVNCVCWdeNGEYLASVSQD-TVKVWSVSSGVCMH 688
           8**********9777*********.************87 PP

UBD/Beta-Prp

   S: 16   vkfspdksllatgsrdgtikvwdvttgkllrsl.sgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdklv 110
           v f p + +l++  + +++ ++dv+++  l +  +gh++ev++v+++++g++l+++s+D t+kvw++s+g c+h l+ + ++  s++f+p   k++
   Q: 616  VRFQPRSGQLLAVAAGSMVNIFDVEKQASLPCPpKGHNSEVNCVCWDENGEYLASVSQD-TVKVWSVSSGVCMHELRSNGNQYQSCTFHPRCPKVL 710
           678676666777778****************999************************9.89****************************887766 PP
   S: 111  sGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlW 164
           + +  +t+++w l+ +q +  + + h+gv+  ++ +p++ +++s+s Dr+v+lW
   Q: 711  IVGGYQTLELWSLSDNQRI--PIQAHEGVIAALAHSPFTGMIASASHDRCVKLW 762
           6667***************..5999***************************** PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MARTNWEADK MLDVYIYDYL VKRNLQATAK AFIAEGKVAT DPVAIDAPGG FLFEWWSIFW 60
DIFHSSTAKA SSTSNASAAA AAAATAAFID HTAKQQQPAG AGAPPPHPLH DSREHQMRLQ 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCGCGGA CCAACTGGGA GGCCGATAAG ATGTGAGTTC CTTCCTTCCT CCTGCTCTTT 60
CGATTTCGAT TTGATGATGA TCTGATCCTG ATCCCCATCC CAATCCCATC CTGTTCCTTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR006594--LisH
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50896--LISH
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08513--LisH
PF00400--WD40

SMART

SM00667--LisH
SM00320--WD40

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000895	Aegilops tauschii	65.88	0.00e+00	906.00
IUUC-Bdi-014357	Brachypodium distachyon	69.25	0.00e+00	969.00
IUUC-Oba-075852	Oryza barthii	65.47	0.00e+00	861.00
IUUC-Obr-076065	Oryza brachyantha	73.73	0.00e+00	806.00
IUUC-Ogl-077588	Oryza glaberrima	71.93	0.00e+00	970.00
IUUC-Ogu-078076	Oryza glumaepatula	66.67	0.00e+00	889.00
IUUC-Oin-079375	Oryza indica	68.77	0.00e+00	959.00
IUUC-Ome-081919	Oryza meridionalis	68.57	0.00e+00	781.00
IUUC-Oni-082308	Oryza nivara	66.88	0.00e+00	907.00
IUUC-Opu-083437	Oryza punctata	68.70	0.00e+00	951.00
IUUC-Oru-085080	Oryza rufipogon	66.62	0.00e+00	890.00
IUUC-Osa-085544	Oryza sativa	71.93	0.00e+00	970.00
IUUC-Sit-110244	Setaria italica	83.09	0.00e+00	1149.00
IUUC-Tae-125279	Triticum aestivum	66.96	0.00e+00	919.00
IUUC-Tur-125961	Triticum urartu	64.37	0.00e+00	882.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence