iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Details
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-007692

UUCD1 version

UUC-ArT-01432

Ensembl Protein ID

AT5G37490.1

UniProt Accession

Q5PNY6; Q9FGI7; PUB21_ARATH

Genbank Protein ID

BAB10667.1; AED94197.1; AAV85666.1; AAW30018.1

Protein Name

U-box domain-containing protein 21; Plant U-box protein 21; RING-type E3 ubiquitin transferase PUB21

Genbank Nucleotide ID

AB025630; CP002688; BT020311; BT020439

Gene Name

PUB21; At5g37490; MPA22.3

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT5G37490	AT5G37490.1	AT5G37490.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein Expression/Proteomics

Status

Reviewed

Details

Family	Domain	References (PMIDs)
E3 activity/RING/U-box	U-box	16699537

Classification

Family	E-value	Score	Start	End
E3 activity/RING/U-box	7.00e-33	113.4	31	103

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceenss 74
           +p+ef CpIs +lM+dPv++++Gitydr sIe w++sg+ktcPvt++ lt  d++Pn+t+r++iq wc e++s
   Q: 31   IPPEFQCPISIDLMKDPVIISTGITYDRVSIETWINSGNKTCPVTNTVLTTFDQIPNHTIRKMIQGWCVEKGS 103
           8*******************************************************************99875 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Functions as an E3 ubiquitin ligase.

Protein Sequence
(Fasta)

MGFLWRTRSN EKKITPVLSW PESEPESEIT IPPEFQCPIS IDLMKDPVII STGITYDRVS 60
IETWINSGNK TCPVTNTVLT TFDQIPNHTI RKMIQGWCVE KGSPLIQRIP TPRVPLMPCE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTGAGATTTA GTCCACAATA ATTAACTACA GAACTAACCT CAACGAACTA ATCAACTGAA 60
AGTTCTTTTA TTCCTTGAAA AATTCAATGG TCAAAAGTTT CCAGTCCCTA GACCAACACA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0808--Transferase
KW-0833--Ubl conjugation pathway

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51698--U_BOX

Pfam

PF04564--U-box

SMART

SM00504--Ubox

Gene Ontology

GO:0004842--F:ubiquitin-protein transferase activity
GO:0010200--P:response to chitin

KEGG

ath:AT5G37490

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-006171	Arabidopsis lyrata	90.41	0.00e+00	712.00
IUUC-Bdi-014644	Brachypodium distachyon	37.84	2.00e-72	265.00
IUUC-Bol-016269	Brassica oleracea	77.78	0.00e+00	637.00
IUUC-Bra-017285	Brassica rapa	77.63	0.00e+00	641.00
IUUC-Gma-043784	Glycine max	46.78	5.00e-99	353.00
IUUC-Hvu-047616	Hordeum vulgare	37.30	2.00e-72	265.00
IUUC-Lpe-050701	Leersia perrieri	36.94	3.00e-56	211.00
IUUC-Mac-064511	Musa acuminata	41.43	1.00e-68	253.00
IUUC-Ogl-077061	Oryza glaberrima	39.19	5.00e-56	211.00
IUUC-Ogu-078268	Oryza glumaepatula	38.92	1.00e-53	203.00
IUUC-Oin-079382	Oryza indica	39.15	2.00e-54	205.00
IUUC-Olo-080664	Oryza longistaminata	35.67	4.00e-37	147.00
IUUC-Oni-082958	Oryza nivara	39.39	1.00e-53	203.00
IUUC-Opu-084061	Oryza punctata	38.10	2.00e-68	251.00
IUUC-Osa-086217	Oryza sativa	39.15	2.00e-54	205.00
IUUC-Pop-099312	Populus trichocarpa	49.78	9.00e-106	376.00
IUUC-Ppe-101406	Prunus persica	49.76	3.00e-111	394.00
IUUC-Sit-109976	Setaria italica	38.85	3.00e-76	278.00
IUUC-Sly-111602	Solanum lycopersicum	46.17	6.00e-92	330.00
IUUC-Stu-112797	Solanum tuberosum	46.52	7.00e-92	330.00
IUUC-Sbi-114336	Sorghum bicolor	38.69	4.00e-47	181.00
IUUC-Tca-120967	Theobroma cacao	48.40	1.00e-93	335.00
IUUC-Tae-124576	Triticum aestivum	38.06	3.00e-67	248.00
IUUC-Vvi-131485	Vitis vinifera	48.92	2.00e-93	335.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence