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Tag Content
iUUCD ID IUUC-Pop-100025
Ensembl Protein ID POPTR_0011s16910.1
UniProt Accession U5G2U0; U5G2U0_POPTR
Genbank Protein ID ERP55777.1
Protein Name VARICOSE family protein
Genbank Nucleotide ID CM000347
Gene Name POPTRDRAFT_270075; POPTR_0011s16910g
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
POPTR_0011s16910 POPTR_0011s16910.1 POPTR_0011s16910.1
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 4.50e-12 46.8 360 390
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtcl...af.sdtllvsGsdDgtikvWD 29
    H ++vt+l ++ + t+lvs+s Dgtik+WD
   Q: 360 HDGEVTALsmcQWmT-TRLVSSSMDGTIKIWD 390
    899999973325655.99*************8 PP
   

Organism Populus trichocarpa
Protein Sequence
(Fasta)
MASRNHHQQQ PSPSHSPPLD MHTFFMPTPT SPPPPQNPSP PLPPNLMVLP LQQIPSSSYP 60
PPTGTQHFPF APSYPPQQNP NPNNPPPLAN MHPQRSLSYP TPPLTPNQQL QDRSGAEIMA 120
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Protein Fasta Sequence



>IUUC-Pop-100025|E3,WD_repeat|Populus trichocarpa
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Nucleotide Sequence
(Fasta)
ATGGCATCCC GAAATCATCA CCAACAGCAG CCATCACCAT CACATTCTCC TCCTCTTGAC 60
ATGCACACAT TCTTCATGCC CACACCCACT TCACCACCAC CACCCCAAAA CCCTTCACCC 120
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Nucleotide Fasta Sequence



>IUUC-Pop-100025|E3,WD_repeat|Populus trichocarpa
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Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR032401--EDC4_WD40
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF16529--Ge1_WD40

SMART

SM00320--WD40

Gene Ontology

GO:0000932--C:P-body
GO:0031087--P:deadenylation-independent decapping of nuclear-transcribed mRNA

KEGG pop:POPTR_0011s16910g
Orthology
iUUCD ID Species Identity E-value Score
Created Date 25-Jun-2017

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