iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Tca-121605

Ensembl Protein ID

EOY03661

UniProt Accession

A0A061EFC2; A0A061EFC2_THECC

Genbank Protein ID

EOY03660.1; EOY03661.1

Protein Name

Ribosome biogenesis protein WDR12 homolog

Genbank Nucleotide ID

CM001882; CM001882

Gene Name

TCM_018752

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
TCM_018752	EOY03661	EOY03661
TCM_018752	EOY03664	EOY03664

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	6.40e-30	102.9	360	394

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf...sdtllvsGsdDgtikvWDlrtg 33
           H+++++++++   s+ +l+s+s+Dg++++WDlrt 
   Q: 360  HSSWISACKWhdrSSFHLLSSSYDGKVMLWDLRTA 394
           **********9965588***************986 PP

Organism

Theobroma cacao

Functional Description
(View)

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Protein Sequence
(Fasta)

MEIDGDTNED NSRRIQVRFV TKLKAPYKVP TTAIAIPSDL SRLGLSSIVN KLLQAVVSEW 60
KTEPFDFLIN GELVRMSLEQ FLLAKGISAE KILEIEYIRA VAPRKEEEPS PHDDWVSAVD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TTCTTCTTCT TCTTCTTTCT CTTACTTTAA CAAACCTAGA AGGAAGAAAA GTTTTAAAGA 60
AAGATGGAAA TTGACGGGGA CACCAATGAA GACAACTCAA GGAGGATTCA AGTGAGATTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08154--NLE
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000532	Aegilops tauschii	65.36	3.00e-171	593.00
IUUC-Aml-001997	Ailuropoda melanoleuca	35.98	1.00e-58	219.00
IUUC-Atr-002544	Amborella trichopoda	61.09	6.00e-157	546.00
IUUC-Apl-003981	Anas platyrhynchos	36.31	3.00e-58	218.00
IUUC-Aca-004370	Anolis carolinensis	35.32	7.00e-65	240.00
IUUC-Aly-006455	Arabidopsis lyrata	74.02	0.00e+00	677.00
IUUC-Ath-006669	Arabidopsis thaliana	75.17	0.00e+00	670.00
IUUC-Ago-007864	Ashbya gossypii	30.87	1.00e-45	176.00
IUUC-Acl-008177	Aspergillus clavatus	30.81	2.00e-44	172.00
IUUC-Afl-008617	Aspergillus flavus	29.24	2.00e-41	162.00
IUUC-Afu-008752	Aspergillus fumigatus	29.73	8.00e-41	160.00
IUUC-Ani-009136	Aspergillus nidulans	32.39	9.00e-44	170.00
IUUC-Ang-009701	Aspergillus niger	29.72	1.00e-40	160.00
IUUC-Aor-009884	Aspergillus oryzae	29.24	4.00e-42	164.00
IUUC-Ate-010472	Aspergillus terreus	24.70	1.00e-14	72.80
IUUC-Ame-011432	Astyanax mexicanus	34.70	1.00e-69	256.00
IUUC-Bgr-012218	Blumeria graminis	29.58	1.00e-40	160.00
IUUC-Bta-012829	Bos taurus	35.58	6.00e-61	227.00
IUUC-Bci-013953	Botrytis cinerea	28.71	3.00e-41	161.00
IUUC-Bdi-014351	Brachypodium distachyon	66.36	2.00e-165	574.00
IUUC-Bol-016514	Brassica oleracea	72.29	1.00e-176	611.00
IUUC-Bra-016988	Brassica rapa	72.06	1.00e-176	611.00
IUUC-Cel-018569	Caenorhabditis elegans	24.32	4.00e-29	121.00
IUUC-Cja-019468	Callithrix jacchus	36.54	2.00e-58	218.00
IUUC-Cfa-020471	Canis familiaris	35.34	4.00e-57	214.00
IUUC-Cpo-022260	Cavia porcellus	36.78	1.00e-60	226.00
IUUC-Cre-022614	Chlamydomonas reinhardtii	37.97	4.00e-63	234.00
IUUC-Csa-023989	Chlorocebus sabaeus	36.30	2.00e-58	219.00
IUUC-Cho-024426	Choloepus hoffmanni	34.92	9.00e-45	173.00
IUUC-Cin-025789	Ciona intestinalis	29.45	5.00e-49	187.00
IUUC-Cne-027063	Cryptococcus neoformans	27.09	2.00e-29	122.00
IUUC-Dre-027907	Danio rerio	35.66	5.00e-69	254.00
IUUC-Dno-029225	Dasypus novemcinctus	35.82	7.00e-60	223.00
IUUC-Dor-031082	Dipodomys ordii	28.76	1.00e-35	143.00
IUUC-Dse-031308	Dothistroma septosporum	32.82	3.00e-48	185.00
IUUC-Dme-032189	Drosophila melanogaster	30.38	2.00e-44	172.00
IUUC-Ete-032247	Echinops telfairi	33.65	2.00e-53	202.00
IUUC-Eca-034285	Equus caballus	35.58	4.00e-60	224.00
IUUC-Eeu-035322	Erinaceus europaeus	32.92	3.00e-51	194.00
IUUC-Fca-036114	Felis catus	35.82	6.00e-60	223.00
IUUC-Fal-036891	Ficedula albicollis	35.35	7.00e-52	196.00
IUUC-Fox-037965	Fusarium oxysporum	27.06	1.00e-35	143.00
IUUC-Fso-038244	Fusarium solani	27.08	4.00e-35	141.00
IUUC-Gmo-039040	Gadus morhua	36.30	8.00e-70	256.00
IUUC-Ggr-040093	Gaeumannomyces graminis	25.55	2.00e-28	119.00
IUUC-Gga-040610	Gallus gallus	34.38	2.00e-61	228.00
IUUC-Gac-042117	Gasterosteus aculeatus	35.89	7.00e-66	243.00
IUUC-Gma-043146	Glycine max	73.79	0.00e+00	678.00
IUUC-Ggo-045179	Gorilla gorilla	36.30	3.00e-59	221.00
IUUC-Hsa-046114	Homo sapiens	36.30	1.00e-58	219.00
IUUC-Hvu-047331	Hordeum vulgare	65.83	1.00e-149	521.00
IUUC-Itr-048275	Ictidomys tridecemlineatus	36.30	5.00e-61	227.00
IUUC-Kpa-049304	Komagataella pastoris	30.04	1.00e-43	169.00
IUUC-Lch-050655	Latimeria chalumnae	33.91	1.00e-46	179.00
IUUC-Lpe-051675	Leersia perrieri	64.88	4.00e-169	587.00
IUUC-Loc-052868	Lepisosteus oculatus	36.54	2.00e-66	245.00
IUUC-Lma-053258	Leptosphaeria maculans	30.27	1.00e-39	158.00
IUUC-Laf-053993	Loxodonta africana	35.58	1.00e-60	226.00
IUUC-Mcc-055128	Macaca mulatta	29.64	1.00e-37	149.00
IUUC-Meu-056501	Macropus eugenii	36.25	9.00e-50	189.00
IUUC-Mor-057114	Magnaporthe oryzae	28.07	2.00e-38	152.00
IUUC-Mtr-058367	Medicago truncatula	70.80	0.00e+00	638.00
IUUC-Mla-059107	Melampsora laricipopulina	28.27	8.00e-36	144.00
IUUC-Mga-059745	Meleagris gallopavo	34.76	3.00e-59	221.00
IUUC-Mvi-060362	Microbotryum violaceum	25.98	2.00e-33	136.00
IUUC-Mdo-062257	Monodelphis domestica	35.89	9.00e-64	236.00
IUUC-Mmu-063546	Mus musculus	35.34	5.00e-60	224.00
IUUC-Mac-065540	Musa acuminata	66.35	3.00e-170	590.00
IUUC-Mpu-066284	Mustela putorius furo	35.82	1.00e-60	226.00
IUUC-Mlu-067241	Myotis lucifugus	36.54	4.00e-61	227.00
IUUC-Nfi-068260	Neosartorya fischeri	29.24	7.00e-42	164.00
IUUC-Ncr-068719	Neurospora crassa	28.57	2.00e-34	139.00
IUUC-Nle-068981	Nomascus leucogenys	36.30	8.00e-58	216.00
IUUC-Opr-071218	Ochotona princeps	34.66	2.00e-56	211.00
IUUC-Ont-071646	Oreochromis niloticus	34.86	9.00e-62	229.00
IUUC-Oan-073453	Ornithorhynchus anatinus	35.58	1.00e-69	256.00
IUUC-Ocu-074008	Oryctolagus cuniculus	36.30	1.00e-61	229.00
IUUC-Oba-075712	Oryza barthii	55.58	2.00e-132	464.00
IUUC-Obr-076721	Oryza brachyantha	63.93	2.00e-169	587.00
IUUC-Ogl-077229	Oryza glaberrima	64.30	3.00e-169	587.00
IUUC-Ogu-078977	Oryza glumaepatula	55.35	5.00e-132	463.00
IUUC-Oin-079683	Oryza indica	63.84	2.00e-168	583.00
IUUC-Olo-080291	Oryza longistaminata	55.12	2.00e-93	334.00
IUUC-Ome-081834	Oryza meridionalis	65.34	2.00e-168	584.00
IUUC-Oni-082507	Oryza nivara	61.78	6.00e-159	553.00
IUUC-Opu-083396	Oryza punctata	65.35	2.00e-170	591.00
IUUC-Oru-085220	Oryza rufipogon	62.01	1.00e-159	555.00
IUUC-Osa-085767	Oryza sativa	63.84	2.00e-168	583.00
IUUC-Ola-087420	Oryzias latipes	35.82	2.00e-67	248.00
IUUC-Olu-087740	Ostreococcus lucimarinus	33.49	1.00e-60	226.00
IUUC-Oga-088264	Otolemur garnettii	34.86	4.00e-57	214.00
IUUC-Oar-089335	Ovis aries	35.82	4.00e-61	228.00
IUUC-Ptr-091320	Pan troglodytes	36.30	1.00e-58	219.00
IUUC-Pan-092833	Papio anubis	36.54	1.00e-58	219.00
IUUC-Psi-093504	Pelodiscus sinensis	34.86	4.00e-59	221.00
IUUC-Pma-094189	Petromyzon marinus	36.12	4.00e-62	231.00
IUUC-Pno-094929	Phaeosphaeria nodorum	29.27	5.00e-40	157.00
IUUC-Ppa-095429	Physcomitrella patens	51.49	3.00e-126	444.00
IUUC-Pfo-096337	Poecilia formosa	34.86	2.00e-66	245.00
IUUC-Pab-097571	Pongo abelii	36.30	1.00e-58	219.00
IUUC-Pop-099977	Populus trichocarpa	75.86	0.00e+00	692.00
IUUC-Pca-100394	Procavia capensis	33.50	4.00e-49	187.00
IUUC-Ppe-101848	Prunus persica	72.64	0.00e+00	671.00
IUUC-Pva-102921	Pteropus vampyrus	34.82	1.00e-26	113.00
IUUC-Pgr-103637	Puccinia graminis	27.90	3.00e-36	145.00
IUUC-Ptt-103781	Puccinia triticina	27.19	1.00e-34	140.00
IUUC-Pte-104135	Pyrenophora teres	30.14	3.00e-40	160.00
IUUC-Pyt-104609	Pyrenophora triticirepentis	28.85	2.00e-41	162.00
IUUC-Rno-105114	Rattus norvegicus	35.58	3.00e-60	224.00
IUUC-Sce-106401	Saccharomyces cerevisiae	29.96	2.00e-44	172.00
IUUC-Sha-107122	Sarcophilus harrisii	36.75	6.00e-61	227.00
IUUC-Sja-107766	Schizosaccharomyces japonicus	28.24	2.00e-43	169.00
IUUC-Spo-108134	Schizosaccharomyces pombe	29.08	1.00e-38	153.00
IUUC-Ssl-108398	Sclerotinia sclerotiorum	28.61	4.00e-44	171.00
IUUC-Smo-108720	Selaginella moellendorffii	50.72	2.00e-120	424.00
IUUC-Sit-110354	Setaria italica	66.05	8.00e-172	595.00
IUUC-Sly-111023	Solanum lycopersicum	66.52	2.00e-172	597.00
IUUC-Stu-112778	Solanum tuberosum	73.06	0.00e+00	632.00
IUUC-Sar-113596	Sorex araneus	32.42	7.00e-44	170.00
IUUC-Sbi-114193	Sorghum bicolor	65.20	2.00e-163	568.00
IUUC-Sre-115002	Sporisorium reilianum	25.71	2.00e-17	83.20
IUUC-Ssc-116066	Sus scrofa	35.82	1.00e-60	226.00
IUUC-Tgu-117048	Taeniopygia guttata	35.50	1.00e-56	212.00
IUUC-Tsy-119573	Tarsius syrichta	25.99	2.00e-20	92.00
IUUC-Tni-119820	Tetraodon nigroviridis	35.34	7.00e-63	233.00
IUUC-Tre-121947	Trichoderma reesei	26.60	3.00e-37	148.00
IUUC-Tvi-122481	Trichoderma virens	26.80	2.00e-36	146.00
IUUC-Tae-123504	Triticum aestivum	65.59	2.00e-172	597.00
IUUC-Tur-126586	Triticum urartu	66.08	5.00e-158	549.00
IUUC-Tme-126900	Tuber melanosporum	31.89	3.00e-54	204.00
IUUC-Tbe-127736	Tupaia belangeri	31.14	9.00e-35	140.00
IUUC-Ttr-129041	Tursiops truncatus	31.25	1.00e-43	169.00
IUUC-Vpa-130260	Vicugna pacos	35.82	9.00e-61	226.00
IUUC-Vvi-131009	Vitis vinifera	76.03	0.00e+00	692.00
IUUC-Xtr-132083	Xenopus tropicalis	36.06	3.00e-62	231.00
IUUC-Xma-133094	Xiphophorus maculatus	34.86	6.00e-66	243.00
IUUC-Yli-134531	Yarrowia lipolytica	26.11	4.00e-31	128.00
IUUC-Zma-135509	Zea mays	66.05	2.00e-172	597.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence