iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
fgenesh2_kg.5__1861__AT3G54650.1	fgenesh2_kg.5__1861__AT3G54650.1	fgenesh2_kg.5__1861__AT3G54650.1

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 adaptor/Cullin RING/SCF/F-box	96.96	0.00e+00	975.00	IUUC-Ath-007393

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Arabidopsis lyrata

Protein Sequence
(Fasta)

MQPQPHISPT TATAAISAAL ESQRVRKNRG SYNCGRCGQP KKGHVCLLTA PPDIPTTPIA 60
SEPVSCISAA ASSSRSTVLS LTAAPSSRQS FTHLRRALSF DDVDARNSLD ESDLDAASAD 120

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Nucleotide Sequence
(Fasta)

AAATCTCACG ATGCAACCTC AGCCGCATAT TTCTCCGACC ACCGCAACTG CCGCGATCTC 60
AGCCGCGCTT GAATCTCAGC GCGTCCGAAA AAACCGAGGA AGTTACAATT GCGGTAGATG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR001810--F-box_dom
IPR032675--L_dom-like
IPR006553--Leu-rich_rpt_Cys-con_subtyp

Pfam

PF00646--F-box

SMART

SM00367--LRR_CC

Gene Ontology

GO:0001673--C:male germ cell nucleus
GO:0019005--C:SCF ubiquitin ligase complex
GO:0009793--P:embryo development ending in seed dormancy
GO:0055047--P:generative cell mitosis
GO:0009555--P:pollen development
GO:0031146--P:SCF-dependent proteasomal ubiquitin-dependent protein catabolic process

KEGG

aly:ARALYDRAFT_485869

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000445	Aegilops tauschii	54.99	8.00e-106	376.00
IUUC-Atr-002985	Amborella trichopoda	58.79	3.00e-130	458.00
IUUC-Ath-007393	Arabidopsis thaliana	96.96	0.00e+00	987.00
IUUC-Ani-009335	Aspergillus nidulans	23.60	2.30e-02	35.80
IUUC-Ang-009675	Aspergillus niger	22.47	1.00e-02	35.40
IUUC-Bdi-014107	Brachypodium distachyon	49.74	6.00e-116	410.00
IUUC-Bol-015754	Brassica oleracea	83.33	0.00e+00	851.00
IUUC-Bra-017822	Brassica rapa	84.87	0.00e+00	889.00
IUUC-Csv-025861	Ciona savignyi	29.89	3.00e-05	43.50
IUUC-Gma-042847	Glycine max	61.90	9.00e-167	579.00
IUUC-Hvu-047594	Hordeum vulgare	53.55	2.00e-113	401.00
IUUC-Lpe-051054	Leersia perrieri	57.70	4.00e-115	407.00
IUUC-Mtr-057878	Medicago truncatula	69.63	7.00e-156	543.00
IUUC-Mvi-060550	Microbotryum violaceum	28.93	3.30e-02	33.50
IUUC-Mac-065661	Musa acuminata	52.65	6.00e-157	546.00
IUUC-Oba-075222	Oryza barthii	51.43	8.00e-112	396.00
IUUC-Obr-076319	Oryza brachyantha	56.65	3.00e-123	434.00
IUUC-Ogl-077268	Oryza glaberrima	57.96	8.00e-118	416.00
IUUC-Ogu-078988	Oryza glumaepatula	55.24	3.00e-124	438.00
IUUC-Oin-079671	Oryza indica	56.49	1.00e-123	435.00
IUUC-Olo-080720	Oryza longistaminata	58.07	2.00e-105	375.00
IUUC-Oni-082672	Oryza nivara	56.68	9.00e-124	436.00
IUUC-Opu-083555	Oryza punctata	58.26	2.00e-125	442.00
IUUC-Oru-085222	Oryza rufipogon	56.68	6.00e-124	437.00
IUUC-Osa-085326	Oryza sativa	55.65	4.00e-124	437.00
IUUC-Pop-099984	Populus trichocarpa	59.63	6.00e-160	556.00
IUUC-Ppe-102083	Prunus persica	62.07	3.00e-178	617.00
IUUC-Sit-110802	Setaria italica	55.10	5.00e-118	417.00
IUUC-Sly-111264	Solanum lycopersicum	59.24	6.00e-160	556.00
IUUC-Stu-112225	Solanum tuberosum	59.72	6.00e-159	553.00
IUUC-Sbi-114580	Sorghum bicolor	49.74	2.00e-128	452.00
IUUC-Tca-121854	Theobroma cacao	62.85	2.00e-177	615.00
IUUC-Tae-123806	Triticum aestivum	54.46	3.00e-114	405.00
IUUC-Tur-126204	Triticum urartu	51.82	1.00e-95	342.00
IUUC-Vvi-130932	Vitis vinifera	64.64	1.00e-156	545.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence