iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Pop-099768

Ensembl Protein ID

POPTR_0006s23990.1

UniProt Accession

B9HD31; B9HD31_POPTR

Genbank Protein ID

EEE92058.1

Protein Name

PHD finger family protein

Genbank Nucleotide ID

CM000342

Gene Name

POPTRDRAFT_717823; POPTR_0006s23990g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0006s23990	POPTR_0006s23990.1	POPTR_0006s23990.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	3.30e-08	34.7	198	248

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 2    kvClvCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCpkCrs 53
           + C  Cge++++++  ++C++C++wfH +C+k++     +  +++ Cp+C++
   Q: 198  TLCGACGENYASDEFWICCDICEKWFHGKCVKIT-PARAEHIKQYKCPSCSN 248
           68************99******************.666666677******86 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MDGGASYNPR TVEEVFRDFK GRRAGMIKAL TTDVEEFYQQ CDPEKENLCL YGFPSEQWEV 60
NLPAEEVPPE LPEPALGINF ARDGMQEKDW LSLVAVHSDA WLLSVSFYFG SRFGFDKADR 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGATGGGCC TGTTTGGAGA GACACATCCA TCTCCGGTAC TTGGCGGACT CTTCACCCTT 60
TTATAAAATC CGATTAATTG ATCCATTTCA TTCCCGATTC AAATCCAACA CCTTCCTTCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR021998--Alfin
IPR019786--Zinc_finger_PHD-type_CS
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS01359--ZF_PHD_1
PS50016--ZF_PHD_2

Pfam

PF12165--Alfin
PF00628--PHD

SMART

SM00249--PHD

Gene Ontology

GO:0008270--F:zinc ion binding
GO:0006355--P:regulation of transcription, DNA-templated

KEGG

pop:POPTR_0006s23990g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001165	Aegilops tauschii	51.52	7.00e-65	239.00
IUUC-Atr-002983	Amborella trichopoda	84.50	4.00e-97	347.00
IUUC-Bdi-014599	Brachypodium distachyon	66.67	2.00e-83	301.00
IUUC-Gma-043342	Glycine max	86.17	1.00e-98	352.00
IUUC-Hvu-047100	Hordeum vulgare	58.61	2.00e-72	265.00
IUUC-Lpe-050738	Leersia perrieri	60.25	8.00e-76	275.00
IUUC-Mtr-057868	Medicago truncatula	81.54	6.00e-96	342.00
IUUC-Mac-064462	Musa acuminata	63.20	5.00e-78	283.00
IUUC-Oba-075021	Oryza barthii	54.75	3.00e-69	254.00
IUUC-Ogl-077422	Oryza glaberrima	59.02	3.00e-70	257.00
IUUC-Ogu-079021	Oryza glumaepatula	54.75	3.00e-69	254.00
IUUC-Oin-079713	Oryza indica	66.42	7.00e-83	299.00
IUUC-Ome-081881	Oryza meridionalis	59.02	3.00e-70	257.00
IUUC-Oni-082314	Oryza nivara	58.61	8.00e-70	256.00
IUUC-Opu-083359	Oryza punctata	59.43	2.00e-70	258.00
IUUC-Oru-085108	Oryza rufipogon	56.97	2.00e-66	244.00
IUUC-Osa-085794	Oryza sativa	66.06	2.00e-82	298.00
IUUC-Ppa-095899	Physcomitrella patens	72.48	3.00e-86	310.00
IUUC-Ppe-101390	Prunus persica	87.75	3.00e-104	370.00
IUUC-Sce-106445	Saccharomyces cerevisiae	32.65	2.00e-03	37.00
IUUC-Smo-109237	Selaginella moellendorffii	51.84	8.00e-53	199.00
IUUC-Sit-110822	Setaria italica	85.92	2.00e-58	218.00
IUUC-Sly-111824	Solanum lycopersicum	81.71	4.00e-89	320.00
IUUC-Stu-112881	Solanum tuberosum	79.92	4.00e-92	330.00
IUUC-Tca-121679	Theobroma cacao	87.75	2.00e-99	354.00
IUUC-Tae-125833	Triticum aestivum	66.67	2.00e-84	304.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence