iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Rno-105044

Ensembl Protein ID

ENSRNOP00000017230.2

UniProt Accession

D3ZGS7; D3ZGS7_RAT

Genbank Protein ID

ENSRNOP00000017230

Protein Name

40S ribosomal protein S30

Genbank Nucleotide ID

AABR07030085

Gene Name

RGD1565317

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSRNOG00000023182.2	ENSRNOT00000017230.3	ENSRNOP00000017230.2

Annotation

Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
ULD/UDP/UBQ/UBQ_Other	4.60e-10	39.6	2	71

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

ULD/UDP/UBQ/UBQ_Other

   S: 2    qvtvksldgseltlkvnpsdtVaeLKekiekklgippeqqrLiykGkiLeddktLadyglkdgstihllekk 73
           q++v+  +   +tl+v  ++tVa++K ++ + +gi pe+q  + + ++Led  tL+++g+   +t+ +  ++
   Q: 2    QLFVRAQEL--HTLEVTGQETVAQIKAHVASMEGIAPEDQVVLWQARPLEDEATLGQCGAEALTTLEVAGRM 71
           666776665..9999***************************************************998776 PP

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MQLFVRAQEL HTLEVTGQET VAQIKAHVAS MEGIAPEDQV VLWQARPLED EATLGQCGAE 60
ALTTLEVAGR MLGGKVHGSL ARAGKVRGQT PKVAKQEKKT GGAKRRMQSN RRFVNVVPTF 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGCAGCTCT TTGTCCGAGC CCAGGAACTA CACACCCTCG AGGTGACCGG CCAGGAGACA 60
GTCGCCCAGA TCAAAGCTCA TGTGGCCTCA ATGGAAGGCA TTGCCCCTGA AGATCAAGTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0687--Ribonucleoprotein
KW-0689--Ribosomal protein

Interpro

IPR006846--Ribosomal_S30
IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom

PROSITE

PS50053--UBIQUITIN_2

Pfam

PF04758--Ribosomal_S30
PF00240--ubiquitin

SMART

SM00213--UBQ

Gene Ontology

GO:0005840--C:ribosome
GO:0003735--F:structural constituent of ribosome
GO:0006412--P:translation

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000894	Aegilops tauschii	69.49	7.00e-17	78.20
IUUC-Bta-012743	Bos taurus	89.23	8.00e-64	234.00
IUUC-Bdi-014353	Brachypodium distachyon	69.49	7.00e-17	78.20
IUUC-Cre-022769	Chlamydomonas reinhardtii	74.58	3.00e-18	82.80
IUUC-Cme-027291	Cyanidioschyzon merolae	65.00	6.00e-14	68.20
IUUC-Ete-032553	Echinops telfairi	86.36	2.00e-60	224.00
IUUC-Hvu-047232	Hordeum vulgare	69.49	7.00e-17	78.20
IUUC-Mtr-057879	Medicago truncatula	71.19	2.00e-17	79.70
IUUC-Mvi-060233	Microbotryum violaceum	64.41	6.00e-10	55.10
IUUC-Tae-124773	Triticum aestivum	69.49	3.00e-16	80.90

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence