iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
fgenesh2_kg.7__1205__AT4G29860.1	fgenesh2_kg.7__1205__AT4G29860.1	fgenesh2_kg.7__1205__AT4G29860.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	5.90e-25	87.0	15	46

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDl 30
           gH  sv +++f ++ +ll +Gs Dg +++WD+
   Q: 15   GHRHSVMDVSFhPSkPLLFTGSADGELRIWDT 46
           8***********888****************7 PP

Organism

Arabidopsis lyrata

Protein Sequence
(Fasta)

MSKRPPPDPV AVLRGHRHSV MDVSFHPSKP LLFTGSADGE LRIWDTIQHR AVSSAWAHSR 60
ANGVLAVAAS PWLGENKIIS QGRDGTVKCW DIEDGGLSRD PLLILETSAY HFCKFSLVKK 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTTGGTTTCT CTATTACAAG AGTTTTGGTT TTGTGTAGAA GCTAAATCAG AGATGAGTAA 60
GAGACCTCCG CCTGATCCGG TTGCTGTGCT TAGAGGACAC CGTCACTCTG TTATGGACGT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0048700--P:acquisition of desiccation tolerance in seed
GO:0006974--P:cellular response to DNA damage stimulus
GO:0031570--P:DNA integrity checkpoint
GO:0009793--P:embryo development ending in seed dormancy
GO:0048481--P:plant ovule development
GO:0009663--P:plasmodesma organization
GO:0010497--P:plasmodesmata-mediated intercellular transport
GO:0009555--P:pollen development
GO:0071158--P:positive regulation of cell cycle arrest
GO:0006282--P:regulation of DNA repair
GO:2000280--P:regulation of root development
GO:0010044--P:response to aluminum ion
GO:0072718--P:response to cisplatin

KEGG

aly:ARALYDRAFT_491772

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000703	Aegilops tauschii	47.51	2.00e-96	345.00
IUUC-Aml-001556	Ailuropoda melanoleuca	30.57	5.00e-34	137.00
IUUC-Atr-002691	Amborella trichopoda	55.31	4.00e-128	450.00
IUUC-Apl-003227	Anas platyrhynchos	30.59	3.00e-40	157.00
IUUC-Ath-007145	Arabidopsis thaliana	94.30	0.00e+00	751.00
IUUC-Acl-008132	Aspergillus clavatus	32.54	1.00e-14	73.90
IUUC-Afl-008655	Aspergillus flavus	26.07	8.00e-25	107.00
IUUC-Afu-008778	Aspergillus fumigatus	25.93	3.00e-24	105.00
IUUC-Ang-009760	Aspergillus niger	26.95	8.00e-25	107.00
IUUC-Bgr-012119	Blumeria graminis	27.76	9.00e-29	120.00
IUUC-Bta-012556	Bos taurus	28.97	6.00e-35	140.00
IUUC-Bci-013869	Botrytis cinerea	30.21	5.00e-14	71.20
IUUC-Bdi-014151	Brachypodium distachyon	54.59	9.00e-115	405.00
IUUC-Bol-016319	Brassica oleracea	86.23	0.00e+00	691.00
IUUC-Bra-016675	Brassica rapa	86.79	0.00e+00	691.00
IUUC-Cja-019523	Callithrix jacchus	30.08	1.00e-34	139.00
IUUC-Cfa-021217	Canis familiaris	35.89	6.00e-30	124.00
IUUC-Cpo-021506	Cavia porcellus	30.21	2.00e-33	135.00
IUUC-Csa-023674	Chlorocebus sabaeus	29.71	1.00e-33	136.00
IUUC-Cgl-026723	Colletotrichum gloeosporioides	24.66	4.00e-19	88.60
IUUC-Cne-026836	Cryptococcus neoformans	23.00	5.00e-11	61.60
IUUC-Cme-027295	Cyanidioschyzon merolae	23.42	4.00e-11	61.60
IUUC-Dre-027592	Danio rerio	29.67	1.00e-37	149.00
IUUC-Dno-029880	Dasypus novemcinctus	36.32	6.00e-29	120.00
IUUC-Dor-030266	Dipodomys ordii	37.17	3.00e-27	114.00
IUUC-Dse-031212	Dothistroma septosporum	28.01	2.00e-28	119.00
IUUC-Dme-032209	Drosophila melanogaster	25.33	1.00e-22	99.40
IUUC-Eca-033371	Equus caballus	30.31	4.00e-34	137.00
IUUC-Fca-035558	Felis catus	29.35	1.00e-33	136.00
IUUC-Fal-036794	Ficedula albicollis	31.78	1.00e-41	162.00
IUUC-Gmo-038742	Gadus morhua	28.94	4.00e-35	140.00
IUUC-Gga-040868	Gallus gallus	29.90	1.00e-41	162.00
IUUC-Gac-041646	Gasterosteus aculeatus	28.97	6.00e-39	153.00
IUUC-Gma-044269	Glycine max	63.12	1.00e-142	498.00
IUUC-Ggo-044553	Gorilla gorilla	29.97	4.00e-35	141.00
IUUC-Hsa-046217	Homo sapiens	30.24	3.00e-35	141.00
IUUC-Hvu-047647	Hordeum vulgare	53.60	1.00e-114	405.00
IUUC-Itr-048649	Ictidomys tridecemlineatus	29.47	3.00e-32	131.00
IUUC-Lch-050134	Latimeria chalumnae	27.53	2.00e-35	142.00
IUUC-Lpe-051524	Leersia perrieri	51.16	3.00e-97	347.00
IUUC-Loc-051757	Lepisosteus oculatus	30.15	2.00e-34	139.00
IUUC-Laf-053733	Loxodonta africana	36.19	2.00e-30	125.00
IUUC-Mcc-055477	Macaca mulatta	28.99	2.00e-26	112.00
IUUC-Mor-057289	Magnaporthe oryzae	24.14	1.00e-12	67.40
IUUC-Mpo-057309	Magnaporthe poae	25.77	6.00e-13	68.20
IUUC-Mtr-058616	Medicago truncatula	61.26	5.00e-129	453.00
IUUC-Mga-059637	Meleagris gallopavo	26.16	7.00e-20	90.10
IUUC-Mvi-060385	Microbotryum violaceum	23.23	8.00e-22	97.40
IUUC-Mmr-061675	Microcebus murinus	29.87	1.00e-32	133.00
IUUC-Mdo-062782	Monodelphis domestica	29.79	5.00e-34	137.00
IUUC-Mmu-064058	Mus musculus	31.07	5.00e-40	157.00
IUUC-Mac-065262	Musa acuminata	57.84	7.00e-131	459.00
IUUC-Mpu-066633	Mustela putorius furo	29.21	3.00e-27	115.00
IUUC-Mlu-067333	Myotis lucifugus	35.41	3.00e-30	124.00
IUUC-Nfi-068581	Neosartorya fischeri	26.73	2.00e-26	113.00
IUUC-Ncr-068680	Neurospora crassa	26.80	4.00e-17	82.00
IUUC-Nle-069485	Nomascus leucogenys	40.24	2.00e-30	125.00
IUUC-Oan-073361	Ornithorhynchus anatinus	37.58	5.00e-25	107.00
IUUC-Ocu-073923	Oryctolagus cuniculus	26.36	1.00e-24	107.00
IUUC-Oba-075743	Oryza barthii	50.00	2.00e-104	371.00
IUUC-Obr-076879	Oryza brachyantha	55.38	2.00e-110	391.00
IUUC-Ogl-077813	Oryza glaberrima	55.01	5.00e-115	406.00
IUUC-Ogu-078196	Oryza glumaepatula	50.00	2.00e-104	371.00
IUUC-Oin-080131	Oryza indica	54.74	4.00e-114	404.00
IUUC-Olo-080613	Oryza longistaminata	57.89	1.00e-61	228.00
IUUC-Ome-081912	Oryza meridionalis	51.16	5.00e-104	370.00
IUUC-Oni-082813	Oryza nivara	49.62	3.00e-103	368.00
IUUC-Opu-083663	Oryza punctata	54.59	1.00e-119	422.00
IUUC-Oru-085102	Oryza rufipogon	50.90	4.00e-103	367.00
IUUC-Osa-086204	Oryza sativa	54.74	4.00e-114	404.00
IUUC-Ola-086541	Oryzias latipes	29.90	2.00e-33	135.00
IUUC-Olu-087776	Ostreococcus lucimarinus	37.13	3.00e-20	90.50
IUUC-Oga-088039	Otolemur garnettii	38.76	9.00e-32	130.00
IUUC-Oar-089704	Ovis aries	46.75	5.00e-18	81.30
IUUC-Ptr-091291	Pan troglodytes	29.97	4.00e-35	141.00
IUUC-Pan-092644	Papio anubis	29.60	3.00e-33	134.00
IUUC-Psi-093646	Pelodiscus sinensis	29.97	1.00e-39	156.00
IUUC-Ppa-095698	Physcomitrella patens	40.68	3.00e-79	287.00
IUUC-Pfo-096601	Poecilia formosa	30.41	3.00e-37	148.00
IUUC-Pab-098407	Pongo abelii	30.00	1.00e-35	142.00
IUUC-Pop-099193	Populus trichocarpa	67.10	1.00e-154	538.00
IUUC-Pca-100366	Procavia capensis	28.57	4.00e-29	121.00
IUUC-Ppe-101608	Prunus persica	64.87	3.00e-151	527.00
IUUC-Pva-102775	Pteropus vampyrus	33.61	8.00e-30	123.00
IUUC-Pte-104132	Pyrenophora teres	26.33	2.00e-15	76.30
IUUC-Rno-105626	Rattus norvegicus	28.99	3.00e-35	141.00
IUUC-Sha-106539	Sarcophilus harrisii	29.27	8.00e-33	133.00
IUUC-Sja-107694	Schizosaccharomyces japonicus	26.61	2.00e-23	102.00
IUUC-Spo-108326	Schizosaccharomyces pombe	24.75	2.00e-18	85.50
IUUC-Smo-108756	Selaginella moellendorffii	44.24	1.00e-90	326.00
IUUC-Sit-109771	Setaria italica	57.81	6.00e-129	452.00
IUUC-Sly-111138	Solanum lycopersicum	60.72	2.00e-138	484.00
IUUC-Stu-112425	Solanum tuberosum	61.50	5.00e-140	489.00
IUUC-Sbi-114356	Sorghum bicolor	56.35	4.00e-120	424.00
IUUC-Ssc-115256	Sus scrofa	39.19	5.00e-29	120.00
IUUC-Tgu-116774	Taeniopygia guttata	31.65	5.00e-31	127.00
IUUC-Tru-117900	Takifugu rubripes	31.35	1.00e-34	140.00
IUUC-Tsy-119540	Tarsius syrichta	47.37	7.00e-17	80.10
IUUC-Tni-120252	Tetraodon nigroviridis	28.94	9.00e-39	153.00
IUUC-Tca-121717	Theobroma cacao	65.55	2.00e-150	525.00
IUUC-Tre-122069	Trichoderma reesei	25.75	3.00e-20	92.40
IUUC-Tvi-122673	Trichoderma virens	25.83	2.00e-20	92.80
IUUC-Tae-123804	Triticum aestivum	53.87	3.00e-116	410.00
IUUC-Tme-127222	Tuber melanosporum	35.00	1.00e-16	80.10
IUUC-Ttr-129240	Tursiops truncatus	38.10	7.00e-29	120.00
IUUC-Vda-129913	Verticillium dahliae	25.75	6.00e-16	77.80
IUUC-Vvi-131718	Vitis vinifera	66.15	1.00e-153	535.00
IUUC-Xtr-132109	Xenopus tropicalis	27.79	2.00e-35	142.00
IUUC-Xma-133366	Xiphophorus maculatus	31.27	3.00e-38	151.00
IUUC-Zma-135563	Zea mays	49.87	2.00e-102	365.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence