iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Pop-099635

Ensembl Protein ID

POPTR_0001s17340.1

UniProt Accession

B9GKY2; B9GKY2_POPTR

Genbank Protein ID

EEE84415.2

Protein Name

Transducin family protein

Genbank Nucleotide ID

CM000337

Gene Name

POPTRDRAFT_751482; POPTR_0001s17340g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0001s17340	POPTR_0001s17340.1	POPTR_0001s17340.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.80e-30	103.7	384	414
UBD/Beta-Prp	9.00e-60	203.5	342	592

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 5    svtclaf.sd.tllvsGsdDgtikvWDlrtg 33
           +v+cl + +d  ll++G+dD+++kvW +++g
   Q: 384  DVNCLTYsPDsQLLATGADDNKVKVWTVSSG 414
           79******999***************99877 PP

UBD/Beta-Prp

   S: 13   itcvkfspdksllatgsrd.gtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsf 102
           it+  f +++++l+ g++  g + vw++++++++ + +gh   v+++++spd+++l+tg++D+ +kvw +s+g c++t+++h++ v+sl+f
   Q: 342  ITAAVFNESGNWLVFGCAKlGQLLVWEWRSESYVLKQQGHYFDVNCLTYSPDSQLLATGADDNKVKVWTVSSGFCFVTFSEHTNAVTSLHF 432
           7888899**********87699********************************************************************* PP
   S: 103  spsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrt.vrlWdlktgkllrtltgghtdsvyslsfdsng 192
           +++++ l+s+s d t+r wdl  +  ++++ ++ ++   +++ +++g ++ +G+lD++ + +W++ktg+ll+ l+g h ++v+ l+f+++ 
   Q: 433  MANNHCLLSASLDGTVRAWDLYRYRNFRTFTTPSSRQFVSLAADQSGEVICAGTLDSFeIFVWSMKTGRLLDILSG-HGGPVHGLIFSPTN 522
           ****************************999999999999****************965****************9.************** PP
   S: 193  kelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlql 262
             l s s d+tv+lwd+ +g+  ++   ht  v+ v   p++  l++ + Dg+i +Wd   g l+ t+++
   Q: 523  AVLTSSSWDKTVRLWDVFEGKGAVETFSHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPIDGLLMYTIEG 592
           *********************************************************9766666666655 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MNYRFHNLLG APYRGGNVVI TQNTQLISPV GNRVSITDLL KSQTITLPLQ SSSNIRRIAA 60
SPDGTFLLTV DENHRCHFIN IPRRVILHRI NFKNAVNALK FSPDGKFIAV AAGKLVQIWR 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AGCTTTAGCT AGCCCAGAGT TTAAACCCTA AACCCTAAGA AAGCAAAGGG AAACTGAGCT 60
GGCTTTCTTC TCCACCTAAC AAACACAGAA GATGAATTAC AGATTTCATA ACCTGCTCGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR027145--PWP2
IPR009091--RCC1/BLIP-II
IPR007148--SSU_processome_Utp12
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04003--Utp12
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0034388--C:Pwp2p-containing subcomplex of 90S preribosome
GO:0032040--C:small-subunit processome
GO:0030515--F:snoRNA binding
GO:0000462--P:maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000028--P:ribosomal small subunit assembly

KEGG

pop:POPTR_0001s17340g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001932	Ailuropoda melanoleuca	42.43	0.00e+00	708.00
IUUC-Atr-003033	Amborella trichopoda	66.20	0.00e+00	1187.00
IUUC-Apl-003219	Anas platyrhynchos	41.60	0.00e+00	706.00
IUUC-Aca-004950	Anolis carolinensis	42.44	0.00e+00	719.00
IUUC-Aly-006213	Arabidopsis lyrata	75.67	0.00e+00	1357.00
IUUC-Ath-006593	Arabidopsis thaliana	74.14	0.00e+00	1334.00
IUUC-Ago-007916	Ashbya gossypii	40.59	0.00e+00	679.00
IUUC-Acl-008225	Aspergillus clavatus	42.23	0.00e+00	729.00
IUUC-Afl-008390	Aspergillus flavus	41.86	0.00e+00	736.00
IUUC-Afu-009039	Aspergillus fumigatus	43.52	0.00e+00	736.00
IUUC-Ani-009228	Aspergillus nidulans	39.78	0.00e+00	629.00
IUUC-Ang-009663	Aspergillus niger	41.97	0.00e+00	708.00
IUUC-Aor-009923	Aspergillus oryzae	41.86	0.00e+00	736.00
IUUC-Ate-010264	Aspergillus terreus	43.17	0.00e+00	747.00
IUUC-Ame-010790	Astyanax mexicanus	35.83	1.00e-69	256.00
IUUC-Bgr-012066	Blumeria graminis	41.86	0.00e+00	712.00
IUUC-Bta-012399	Bos taurus	42.62	0.00e+00	694.00
IUUC-Bci-013757	Botrytis cinerea	47.38	2.00e-158	552.00
IUUC-Bdi-015028	Brachypodium distachyon	71.44	0.00e+00	1244.00
IUUC-Bol-016521	Brassica oleracea	74.11	0.00e+00	1328.00
IUUC-Bra-017096	Brassica rapa	74.33	0.00e+00	1321.00
IUUC-Cel-018690	Caenorhabditis elegans	33.56	9.00e-138	484.00
IUUC-Cja-019229	Callithrix jacchus	43.26	0.00e+00	714.00
IUUC-Cfa-020504	Canis familiaris	41.12	0.00e+00	698.00
IUUC-Cpo-021574	Cavia porcellus	42.01	0.00e+00	726.00
IUUC-Cre-022756	Chlamydomonas reinhardtii	51.40	0.00e+00	639.00
IUUC-Csa-023436	Chlorocebus sabaeus	42.89	0.00e+00	696.00
IUUC-Cin-025397	Ciona intestinalis	40.25	3.00e-159	555.00
IUUC-Csv-026194	Ciona savignyi	37.35	2.00e-173	602.00
IUUC-Cgl-026684	Colletotrichum gloeosporioides	39.89	0.00e+00	660.00
IUUC-Cne-027031	Cryptococcus neoformans	43.10	0.00e+00	755.00
IUUC-Cme-027276	Cyanidioschyzon merolae	30.96	1.00e-106	380.00
IUUC-Dre-027514	Danio rerio	42.40	0.00e+00	696.00
IUUC-Dno-029191	Dasypus novemcinctus	43.69	0.00e+00	640.00
IUUC-Dor-030149	Dipodomys ordii	41.64	0.00e+00	704.00
IUUC-Dse-031260	Dothistroma septosporum	44.52	7.00e-143	500.00
IUUC-Dme-032043	Drosophila melanogaster	37.47	8.00e-172	597.00
IUUC-Ete-033102	Echinops telfairi	46.05	3.00e-150	525.00
IUUC-Eca-033223	Equus caballus	41.60	0.00e+00	714.00
IUUC-Fca-035795	Felis catus	39.96	0.00e+00	646.00
IUUC-Fal-036830	Ficedula albicollis	42.08	0.00e+00	705.00
IUUC-Fox-037835	Fusarium oxysporum	45.48	2.00e-155	543.00
IUUC-Fso-038324	Fusarium solani	40.33	0.00e+00	674.00
IUUC-Gmo-039355	Gadus morhua	41.95	0.00e+00	700.00
IUUC-Ggr-039840	Gaeumannomyces graminis	39.80	2.00e-178	619.00
IUUC-Gga-040907	Gallus gallus	47.87	1.00e-151	529.00
IUUC-Gac-042624	Gasterosteus aculeatus	41.14	0.00e+00	677.00
IUUC-Gma-043559	Glycine max	78.67	0.00e+00	1426.00
IUUC-Hsa-046327	Homo sapiens	42.87	0.00e+00	719.00
IUUC-Hvu-047416	Hordeum vulgare	71.89	0.00e+00	1256.00
IUUC-Itr-049083	Ictidomys tridecemlineatus	42.51	0.00e+00	724.00
IUUC-Kpa-049150	Komagataella pastoris	39.34	0.00e+00	641.00
IUUC-Lch-049460	Latimeria chalumnae	40.47	2.00e-173	602.00
IUUC-Lpe-050840	Leersia perrieri	72.47	0.00e+00	1245.00
IUUC-Loc-052733	Lepisosteus oculatus	41.33	0.00e+00	707.00
IUUC-Lma-053277	Leptosphaeria maculans	38.44	3.00e-170	592.00
IUUC-Laf-054294	Loxodonta africana	42.49	0.00e+00	693.00
IUUC-Mcc-054624	Macaca mulatta	42.65	0.00e+00	717.00
IUUC-Meu-056665	Macropus eugenii	37.04	1.00e-127	450.00
IUUC-Mor-057288	Magnaporthe oryzae	40.13	0.00e+00	658.00
IUUC-Mpo-057594	Magnaporthe poae	40.09	0.00e+00	630.00
IUUC-Mtr-058700	Medicago truncatula	80.34	0.00e+00	1474.00
IUUC-Mla-058846	Melampsora laricipopulina	42.37	0.00e+00	705.00
IUUC-Mga-059207	Meleagris gallopavo	38.71	9.00e-177	613.00
IUUC-Mvi-060327	Microbotryum violaceum	45.07	0.00e+00	782.00
IUUC-Mmr-061264	Microcebus murinus	42.76	0.00e+00	700.00
IUUC-Mdo-062327	Monodelphis domestica	41.83	0.00e+00	696.00
IUUC-Mmu-063542	Mus musculus	41.38	0.00e+00	696.00
IUUC-Mac-065142	Musa acuminata	73.77	0.00e+00	1320.00
IUUC-Mpu-066098	Mustela putorius furo	41.99	3.00e-178	618.00
IUUC-Mlu-067056	Myotis lucifugus	39.56	6.00e-173	600.00
IUUC-Nfi-068323	Neosartorya fischeri	43.26	0.00e+00	737.00
IUUC-Ncr-068925	Neurospora crassa	39.82	0.00e+00	691.00
IUUC-Nle-068970	Nomascus leucogenys	42.54	0.00e+00	715.00
IUUC-Opr-070966	Ochotona princeps	53.97	2.00e-106	379.00
IUUC-Ont-071252	Oreochromis niloticus	41.99	0.00e+00	696.00
IUUC-Oan-072737	Ornithorhynchus anatinus	39.74	0.00e+00	665.00
IUUC-Oba-075794	Oryza barthii	72.30	0.00e+00	1229.00
IUUC-Obr-076617	Oryza brachyantha	72.56	0.00e+00	1261.00
IUUC-Ogl-077022	Oryza glaberrima	73.77	0.00e+00	1281.00
IUUC-Ogu-078757	Oryza glumaepatula	59.09	0.00e+00	937.00
IUUC-Oin-079813	Oryza indica	73.44	0.00e+00	1276.00
IUUC-Olo-080265	Oryza longistaminata	73.33	0.00e+00	1272.00
IUUC-Ome-081494	Oryza meridionalis	73.56	0.00e+00	1277.00
IUUC-Oni-082639	Oryza nivara	59.20	0.00e+00	937.00
IUUC-Opu-084005	Oryza punctata	73.11	0.00e+00	1277.00
IUUC-Oru-084883	Oryza rufipogon	58.91	0.00e+00	935.00
IUUC-Osa-086158	Oryza sativa	73.78	0.00e+00	1281.00
IUUC-Ola-086822	Oryzias latipes	41.93	0.00e+00	698.00
IUUC-Olu-087741	Ostreococcus lucimarinus	31.75	4.00e-22	96.30
IUUC-Oga-088887	Otolemur garnettii	48.17	7.00e-166	577.00
IUUC-Oar-090110	Ovis aries	42.15	0.00e+00	659.00
IUUC-Pan-092808	Papio anubis	42.57	0.00e+00	723.00
IUUC-Psi-093954	Pelodiscus sinensis	42.02	0.00e+00	715.00
IUUC-Pno-094922	Phaeosphaeria nodorum	46.72	9.00e-168	583.00
IUUC-Ppa-095678	Physcomitrella patens	58.38	0.00e+00	979.00
IUUC-Pfo-097175	Poecilia formosa	42.02	0.00e+00	719.00
IUUC-Pab-098155	Pongo abelii	42.70	0.00e+00	718.00
IUUC-Pca-100947	Procavia capensis	40.69	0.00e+00	666.00
IUUC-Ppe-101552	Prunus persica	84.47	0.00e+00	1549.00
IUUC-Pva-102744	Pteropus vampyrus	39.23	4.00e-176	611.00
IUUC-Pgr-103389	Puccinia graminis	41.11	0.00e+00	686.00
IUUC-Ptt-103953	Puccinia triticina	33.89	3.00e-144	505.00
IUUC-Pte-104079	Pyrenophora teres	46.63	4.00e-163	568.00
IUUC-Pyt-104656	Pyrenophora triticirepentis	46.80	3.00e-164	572.00
IUUC-Rno-105502	Rattus norvegicus	41.54	0.00e+00	717.00
IUUC-Sce-106390	Saccharomyces cerevisiae	40.25	0.00e+00	700.00
IUUC-Sja-107674	Schizosaccharomyces japonicus	41.35	0.00e+00	704.00
IUUC-Spo-108348	Schizosaccharomyces pombe	41.06	0.00e+00	689.00
IUUC-Smo-108982	Selaginella moellendorffii	61.27	0.00e+00	1079.00
IUUC-Sit-110304	Setaria italica	73.16	0.00e+00	1301.00
IUUC-Sly-111620	Solanum lycopersicum	85.87	0.00e+00	1007.00
IUUC-Stu-112877	Solanum tuberosum	79.44	0.00e+00	1461.00
IUUC-Sbi-114702	Sorghum bicolor	73.24	0.00e+00	1280.00
IUUC-Sre-115129	Sporisorium reilianum	43.03	0.00e+00	706.00
IUUC-Tgu-116787	Taeniopygia guttata	41.77	0.00e+00	705.00
IUUC-Tru-118218	Takifugu rubripes	41.37	0.00e+00	700.00
IUUC-Tni-120046	Tetraodon nigroviridis	42.12	0.00e+00	669.00
IUUC-Tca-121685	Theobroma cacao	81.94	0.00e+00	1499.00
IUUC-Tre-122154	Trichoderma reesei	41.00	0.00e+00	703.00
IUUC-Tvi-122451	Trichoderma virens	44.63	1.00e-161	563.00
IUUC-Tur-126650	Triticum urartu	73.80	0.00e+00	1191.00
IUUC-Tme-127005	Tuber melanosporum	42.79	0.00e+00	706.00
IUUC-Tbe-128102	Tupaia belangeri	43.60	4.00e-128	451.00
IUUC-Ttr-128259	Tursiops truncatus	42.38	0.00e+00	692.00
IUUC-Uma-129511	Ustilago maydis	43.25	0.00e+00	709.00
IUUC-Vda-129833	Verticillium dahliae	38.43	6.00e-176	610.00
IUUC-Vvi-131572	Vitis vinifera	79.44	0.00e+00	1419.00
IUUC-Xtr-131776	Xenopus tropicalis	34.92	2.00e-60	226.00
IUUC-Xma-133887	Xiphophorus maculatus	42.29	0.00e+00	710.00
IUUC-Yli-134427	Yarrowia lipolytica	40.71	0.00e+00	678.00
IUUC-Zma-135980	Zea mays	72.15	0.00e+00	1243.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence