iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
fgenesh2_kg.6__3455__AT4G02440.1	fgenesh2_kg.6__3455__AT4G02440.1	fgenesh2_kg.6__3455__AT4G02440.1

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 adaptor/Cullin RING/SCF/F-box	90.36	1.00e-167	585.00	IUUC-Ath-007190

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Arabidopsis lyrata

Protein Sequence
(Fasta)

MAESTFSCVP EDVVFNIFFK LQDDPRNWAR LACVCTRFSS IVRNVCCKTQ CYSAIPTVIS 60
DLLPPSSSTA ADSSLPPPGG WASLFKLAVC CPGLFHAGIL LENSDFGLER ELGPDQNLDP 120

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Nucleotide Sequence
(Fasta)

CCACAACAGT ATAAGTGAAG AAGAGAAAGA TTTGGATAAG AAAGAAAGGG GCCGTTGTTA 60
ATTGAATATC AGAGGAGGTT GAGAGAAGAA GAGAGAGATC CATGGCGGAA TCAACCTTCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR001810--F-box_dom

Pfam

PF00646--F-box

Gene Ontology

GO:0005634--C:nucleus
GO:0048366--P:leaf development
GO:0048573--P:photoperiodism, flowering
GO:0009585--P:red, far-red light phototransduction
GO:0010099--P:regulation of photomorphogenesis

KEGG

aly:ARALYDRAFT_490321

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-003146	Amborella trichopoda	55.17	5.00e-62	231.00
IUUC-Ath-007190	Arabidopsis thaliana	86.45	3.00e-157	546.00
IUUC-Bdi-014111	Brachypodium distachyon	70.63	5.00e-46	177.00
IUUC-Bol-015332	Brassica oleracea	73.66	6.00e-90	323.00
IUUC-Bra-017993	Brassica rapa	65.35	2.00e-134	471.00
IUUC-Gac-041514	Gasterosteus aculeatus	30.77	3.30e-02	33.90
IUUC-Gma-044377	Glycine max	55.18	2.00e-87	314.00
IUUC-Hvu-047371	Hordeum vulgare	69.84	6.00e-51	193.00
IUUC-Lpe-051202	Leersia perrieri	66.93	6.00e-50	190.00
IUUC-Mtr-057994	Medicago truncatula	48.29	1.00e-76	278.00
IUUC-Mac-065238	Musa acuminata	55.86	1.00e-89	322.00
IUUC-Oan-073525	Ornithorhynchus anatinus	29.33	1.70e-02	32.70
IUUC-Obr-076134	Oryza brachyantha	60.76	9.00e-26	107.00
IUUC-Ogu-078015	Oryza glumaepatula	67.72	2.00e-50	191.00
IUUC-Oin-079518	Oryza indica	38.74	6.00e-09	53.50
IUUC-Ome-081208	Oryza meridionalis	67.72	6.00e-50	190.00
IUUC-Oni-082680	Oryza nivara	68.50	1.00e-50	192.00
IUUC-Opu-084169	Oryza punctata	67.72	2.00e-50	192.00
IUUC-Oru-084629	Oryza rufipogon	68.50	2.00e-50	192.00
IUUC-Osa-085886	Oryza sativa	68.50	2.00e-50	192.00
IUUC-Ppa-095180	Physcomitrella patens	65.60	3.00e-46	178.00
IUUC-Pop-099458	Populus trichocarpa	61.49	9.00e-105	372.00
IUUC-Ppe-101460	Prunus persica	63.80	4.00e-115	406.00
IUUC-Smo-108886	Selaginella moellendorffii	45.66	5.00e-70	256.00
IUUC-Sit-110679	Setaria italica	65.15	3.00e-49	188.00
IUUC-Sly-111323	Solanum lycopersicum	59.26	9.00e-103	365.00
IUUC-Stu-112407	Solanum tuberosum	59.57	2.00e-97	348.00
IUUC-Sbi-113782	Sorghum bicolor	65.91	5.00e-51	194.00
IUUC-Tru-118670	Takifugu rubripes	30.77	6.00e-02	32.70
IUUC-Tca-121453	Theobroma cacao	62.84	2.00e-100	358.00
IUUC-Tae-123170	Triticum aestivum	70.63	5.00e-52	197.00
IUUC-Vvi-131404	Vitis vinifera	62.39	3.00e-112	397.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence