iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Details
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-006724

UUCD1 version

UUC-ArT-00843

Ensembl Protein ID

AT4G02075.1

UniProt Accession

Q9XF50; Q9XF50_ARATH

Genbank Protein ID

AAD28757.1; AAZ14065.1; AEE82121.1

Protein Name

At4g02075; PIT1; RING/FYVE/PHD zinc finger superfamily protein

Genbank Nucleotide ID

AF130849; DQ086841; CP002687

Gene Name

Pit1; PIT1; pitchoun 1; At4g02075

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT4G02075	AT4G02075.2	AT4G02075.2
AT4G02075	AT4G02075.3	AT4G02075.3
AT4G02075	AT4G02075.1	AT4G02075.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
Protein Expression/Proteomics

Status

Reviewed

Details

Family	Domain	References (PMIDs)
E3 activity/RING/RING	RING	15644464

Classification

Family	E-value	Score	Start	End
E3 activity/RING/RING	0.01	17.3	20	65

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlpCgHv....f.hadClqkwpglknssskefrCPlC 45
           C iC+e+ ++  + +pC       f h++C+q+w    ++++++ +C +C
   Q: 20   CRICHEEEEESFFEVPCACSgtvkFaHRNCIQRW----CNEKGNTTCEIC 65
           ******99998888999766777878********....99********** PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MGDVILFIDD TKSKVRITRC RICHEEEEES FFEVPCACSG TVKFAHRNCI QRWCNEKGNT 60
TCEICLQVYK DGYTAVLKQS KLIEQEVTIR VNGRRRRRSR RLVSIAESDI SQCNSVADRG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TCAGAAGATA ACAAAAACAG AGCAAAGTTT TTCAAAAAAA AAAAAAAAAC AGAGCCACGA 60
AGAAATTTAC AGAAAATTCA AAACCATCGA TAAAGATGGG AGATGTGATT TTGTTCATTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR022143--DUF3675
IPR033275--MARCH-like
IPR011016--Znf_RING-CH
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51292--ZF_RING_CH

Pfam

PF12428--DUF3675
PF12906--RINGv

SMART

SM00744--RINGv

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0005886--C:plasma membrane
GO:0008270--F:zinc ion binding

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-006376	Arabidopsis lyrata	91.89	2.00e-87	314.00
IUUC-Bdi-014566	Brachypodium distachyon	39.89	6.00e-30	123.00
IUUC-Bol-015388	Brassica oleracea	75.39	2.00e-69	254.00
IUUC-Bra-016996	Brassica rapa	74.55	5.00e-74	269.00
IUUC-Lpe-051036	Leersia perrieri	39.23	3.00e-24	104.00
IUUC-Ogl-076942	Oryza glaberrima	42.22	2.00e-32	131.00
IUUC-Oin-079184	Oryza indica	42.22	2.00e-32	131.00
IUUC-Olo-080640	Oryza longistaminata	42.22	2.00e-32	131.00
IUUC-Oru-084407	Oryza rufipogon	42.22	2.00e-32	131.00
IUUC-Tae-124283	Triticum aestivum	41.52	2.00e-28	118.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence