iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
HINT
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.30e-08	35.7	210	243

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtcla.f...sd.tllvsGsdDgtikvWD 29
           gH++s++cl  f   s+  llvsG+ Dg + +W+
   Q: 210  GHKGSIYCLMnFmasSGeALLVSGGSDGLLVLWS 243
           8*******855***766789*************9 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MLRARAFRQT NGKIVKIQVH PTHPWLVTAD DSDHVSVWNW EHRQVIYELK AGGVDERRLV 60
GAKLEKLAEG ESDYKAKPTE AIRGGSVKQV KFYDDDVRYW QLWRNRSAAA ESPSAVNHLT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AGACACTACC GGAGTTTTTG TTCGGCGATT GTAGTTAGTG GTGGTGGATC CGGGCATTTC 60
ATTTGATAAC CGCGGTGGAT CTAATTGATC TGGATCTGAC CATAGCCCTG CTTGCTTTTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

SMART

SM00320--WD40

Gene Ontology

GO:0005886--C:plasma membrane

KEGG

ath:AT5G24710

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000321	Aegilops tauschii	62.11	0.00e+00	1016.00
IUUC-Atr-002897	Amborella trichopoda	75.90	0.00e+00	1720.00
IUUC-Aly-006154	Arabidopsis lyrata	97.02	0.00e+00	2318.00
IUUC-Bdi-014824	Brachypodium distachyon	77.01	0.00e+00	1687.00
IUUC-Bol-016428	Brassica oleracea	92.70	0.00e+00	2111.00
IUUC-Bra-017475	Brassica rapa	92.53	0.00e+00	2123.00
IUUC-Gma-043699	Glycine max	81.98	0.00e+00	1851.00
IUUC-Hvu-047404	Hordeum vulgare	81.99	2.00e-136	478.00
IUUC-Mtr-058798	Medicago truncatula	80.93	0.00e+00	1866.00
IUUC-Mac-065076	Musa acuminata	78.18	0.00e+00	1856.00
IUUC-Oba-075727	Oryza barthii	75.66	0.00e+00	1674.00
IUUC-Obr-076460	Oryza brachyantha	77.45	0.00e+00	1738.00
IUUC-Ogl-077837	Oryza glaberrima	78.03	0.00e+00	1752.00
IUUC-Ogu-078912	Oryza glumaepatula	75.66	0.00e+00	1671.00
IUUC-Oin-079644	Oryza indica	78.03	0.00e+00	1748.00
IUUC-Olo-080463	Oryza longistaminata	75.96	0.00e+00	1445.00
IUUC-Ome-081748	Oryza meridionalis	75.66	0.00e+00	1669.00
IUUC-Oni-083096	Oryza nivara	75.66	0.00e+00	1672.00
IUUC-Opu-083280	Oryza punctata	77.95	0.00e+00	1768.00
IUUC-Oru-084728	Oryza rufipogon	75.66	0.00e+00	1668.00
IUUC-Osa-085295	Oryza sativa	78.03	0.00e+00	1748.00
IUUC-Ppa-095297	Physcomitrella patens	59.15	0.00e+00	1295.00
IUUC-Ppe-101567	Prunus persica	77.98	0.00e+00	1905.00
IUUC-Smo-109297	Selaginella moellendorffii	58.89	0.00e+00	1343.00
IUUC-Sit-109913	Setaria italica	77.24	0.00e+00	1736.00
IUUC-Sly-110980	Solanum lycopersicum	80.87	0.00e+00	1756.00
IUUC-Stu-112643	Solanum tuberosum	80.94	0.00e+00	1764.00
IUUC-Sbi-114411	Sorghum bicolor	77.56	0.00e+00	1382.00
IUUC-Tca-121691	Theobroma cacao	84.21	0.00e+00	1929.00
IUUC-Tae-124034	Triticum aestivum	77.27	0.00e+00	1650.00
IUUC-Tur-126798	Triticum urartu	77.12	0.00e+00	827.00
IUUC-Vvi-131320	Vitis vinifera	85.79	0.00e+00	1260.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence