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Tag Content
UUCD2 ID IUUC-Bdi-014895
UUCD1 version UUC-BrD-01347
Ensembl Protein ID BRADI3G39580.1
UniProt Accession I1I8C0; I1I8C0_BRADI
Genbank Protein ID KQJ98863.1
Protein Name Ribosome biogenesis protein BOP1 homolog
Genbank Nucleotide ID CM000882
Gene Name LOC100839231; BRADI_3g39580
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
BRADI3G39580 BRADI3G39580.1 BRADI3G39580.1
BRADI3G39580 BRADI3G39580.2 BRADI3G39580.2
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 2.90e-14 53.2 339 377
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 1    gHtdsvtclaf..sdtllvsGsdDgtikvWDlrtgvllk 37
           gH+++v +l+   ++  ++sGs Dgti+vW++ tg++lk
   Q: 339  GHNGPVKSLSVeaTGQWIASGSSDGTIRVWEVETGRCLK 377
           8*********9976699********************97 PP
   
Organism Brachypodium distachyon
Functional Description
(View)

Functional Description


     Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.
 Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.
Protein Sequence
(Fasta)
MGHANEDLRP DNNDGLSSDN EPWSEQDDDE GSLSFDDSGS DDSDEDEAVA GESDSSEDEV 60
GPRNTVGQVP LEWYKDEEHI GYDIDGRKIK KRDREGRIEQ YLRNADDAKN WRKIYDVYND 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Bdi-014895|E3,WD_repeat|Brachypodium distachyon
Please wait for a moment...
Nucleotide Sequence
(Fasta)
TCGACATCGG TACTTGACCT CCTAAAACCC TAAACCAGGC GGCGGCCTCC GTCTCTCCGC 60
TCCGCCCCCA GACCAGAGCC TTTCCTCCTC AGCTCAGCCC ACGGCCACCG CACTTGAACC 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Bdi-014895|E3,WD_repeat|Brachypodium distachyon
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat
Interpro

IPR028598--BOP1/Erb1
IPR012953--BOP1_N_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF08145--BOP1NT
PF00400--WD40
SMART

SM01035--BOP1NT
SM00320--WD40
Gene Ontology

GO:0005654--C:nucleoplasm
GO:0070545--C:PeBoW complex
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
KEGG bdi:100839231
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-001158 Aegilops tauschii 83.89 0.00e+00 980.00
IUUC-Atr-003141 Amborella trichopoda 64.37 4.00e-160 556.00
IUUC-Apl-003545 Anas platyrhynchos 42.86 4.00e-128 450.00
IUUC-Aly-005649 Arabidopsis lyrata 64.38 0.00e+00 839.00
IUUC-Ame-011767 Astyanax mexicanus 48.30 2.00e-71 261.00
IUUC-Bta-013569 Bos taurus 46.75 5.00e-152 530.00
IUUC-Bol-016099 Brassica oleracea 65.37 0.00e+00 855.00
IUUC-Cja-019009 Callithrix jacchus 40.98 2.00e-128 452.00
IUUC-Cpo-021796 Cavia porcellus 45.79 2.00e-148 518.00
IUUC-Csa-023440 Chlorocebus sabaeus 46.07 4.00e-154 537.00
IUUC-Dre-028658 Danio rerio 47.44 1.00e-163 569.00
IUUC-Dno-028883 Dasypus novemcinctus 45.56 2.00e-151 529.00
IUUC-Dor-031031 Dipodomys ordii 43.63 1.00e-149 522.00
IUUC-Eca-033677 Equus caballus 45.50 2.00e-148 518.00
IUUC-Fca-035888 Felis catus 44.12 1.00e-145 509.00
IUUC-Gac-042582 Gasterosteus aculeatus 44.92 9.00e-149 519.00
IUUC-Ggo-045587 Gorilla gorilla 45.82 5.00e-154 537.00
IUUC-Hsa-046319 Homo sapiens 45.91 2.00e-154 538.00
IUUC-Hvu-047526 Hordeum vulgare 85.74 0.00e+00 1091.00
IUUC-Itr-048683 Ictidomys tridecemlineatus 46.12 6.00e-152 530.00
IUUC-Lch-049640 Latimeria chalumnae 46.58 3.00e-166 577.00
IUUC-Loc-051930 Lepisosteus oculatus 47.90 1.00e-166 579.00
IUUC-Laf-053903 Loxodonta africana 43.39 3.00e-135 474.00
IUUC-Mcc-055471 Macaca mulatta 45.75 1.00e-153 536.00
IUUC-Meu-056190 Macropus eugenii 46.71 5.00e-152 530.00
IUUC-Mtr-058689 Medicago truncatula 61.64 0.00e+00 810.00
IUUC-Mvi-060485 Microbotryum violaceum 41.87 8.00e-131 461.00
IUUC-Mmr-061674 Microcebus murinus 45.62 2.00e-149 521.00
IUUC-Mdo-062973 Monodelphis domestica 46.23 1.00e-157 549.00
IUUC-Mmu-064180 Mus musculus 45.72 2.00e-151 528.00
IUUC-Mpu-066406 Mustela putorius furo 45.98 3.00e-155 541.00
IUUC-Mlu-067795 Myotis lucifugus 45.95 9.00e-144 503.00
IUUC-Opr-071084 Ochotona princeps 44.88 2.00e-62 232.00
IUUC-Ont-071614 Oreochromis niloticus 45.19 3.00e-159 554.00
IUUC-Oba-075980 Oryza barthii 84.48 0.00e+00 996.00
IUUC-Ogl-077134 Oryza glaberrima 89.22 0.00e+00 1072.00
IUUC-Ogu-078655 Oryza glumaepatula 84.97 0.00e+00 1031.00
IUUC-Oin-079654 Oryza indica 89.22 0.00e+00 1070.00
IUUC-Olo-080706 Oryza longistaminata 84.80 0.00e+00 1003.00
IUUC-Ome-081716 Oryza meridionalis 69.07 0.00e+00 780.00
IUUC-Oni-082508 Oryza nivara 83.03 0.00e+00 996.00
IUUC-Opu-083707 Oryza punctata 84.64 0.00e+00 996.00
IUUC-Oru-084453 Oryza rufipogon 84.80 0.00e+00 1003.00
IUUC-Osa-085811 Oryza sativa 89.05 0.00e+00 1070.00
IUUC-Ola-087361 Oryzias latipes 47.07 2.00e-162 565.00
IUUC-Oga-088015 Otolemur garnettii 45.56 6.00e-157 546.00
IUUC-Ptr-090631 Pan troglodytes 43.53 7.00e-57 213.00
IUUC-Pan-092306 Papio anubis 46.15 8.00e-154 536.00
IUUC-Pma-094622 Petromyzon marinus 46.30 2.00e-162 564.00
IUUC-Ppa-095528 Physcomitrella patens 56.09 3.00e-145 507.00
IUUC-Pfo-096682 Poecilia formosa 45.77 1.00e-160 559.00
IUUC-Pab-097939 Pongo abelii 45.42 3.00e-138 484.00
IUUC-Pop-099043 Populus trichocarpa 69.98 0.00e+00 811.00
IUUC-Pca-100333 Procavia capensis 45.62 2.00e-152 531.00
IUUC-Rno-105248 Rattus norvegicus 45.69 7.00e-150 523.00
IUUC-Sha-106519 Sarcophilus harrisii 47.58 2.00e-158 551.00
IUUC-Smo-109604 Selaginella moellendorffii 59.87 0.00e+00 753.00
IUUC-Sit-110551 Setaria italica 89.07 0.00e+00 1094.00
IUUC-Sly-110970 Solanum lycopersicum 72.30 2.00e-148 518.00
IUUC-Stu-112593 Solanum tuberosum 68.68 0.00e+00 891.00
IUUC-Sbi-113945 Sorghum bicolor 88.13 0.00e+00 1112.00
IUUC-Sre-115188 Sporisorium reilianum 38.94 2.00e-128 452.00
IUUC-Ssc-115352 Sus scrofa 44.82 6.00e-152 530.00
IUUC-Tru-117685 Takifugu rubripes 46.41 1.00e-160 559.00
IUUC-Tni-119982 Tetraodon nigroviridis 46.45 1.00e-155 542.00
IUUC-Tae-125703 Triticum aestivum 90.08 0.00e+00 1092.00
IUUC-Tur-126781 Triticum urartu 83.72 0.00e+00 963.00
IUUC-Ttr-128514 Tursiops truncatus 43.51 8.00e-96 343.00
IUUC-Vvi-131211 Vitis vinifera 66.33 0.00e+00 842.00
IUUC-Xma-133883 Xiphophorus maculatus 45.93 9.00e-157 546.00
Created Date 25-Jun-2017

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