iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Tae-125703

Ensembl Protein ID

TRIAE_CS42_5AL_TGACv1_377853_AA1249800.2

UniProt Accession

A0A1D5YQ89; A0A1D5YQ89_WHEAT

Protein Name

Ribosome biogenesis protein BOP1 homolog

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
TRIAE_CS42_5AL_TGACv1_377853_AA1249800	TRIAE_CS42_5AL_TGACv1_377853_AA1249800.1	TRIAE_CS42_5AL_TGACv1_377853_AA1249800.1
TRIAE_CS42_5AL_TGACv1_377853_AA1249800	TRIAE_CS42_5AL_TGACv1_377853_AA1249800.2	TRIAE_CS42_5AL_TGACv1_377853_AA1249800.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	7.50e-11	44.5	385	423

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sdtllvsGsdDgtikvWDlrtgvllk 37
           gH ++vt+l+   ++  ++sGs Dgti+vW++ tg++lk
   Q: 385  GHGGPVTSLSVeaTGQWIASGSSDGTIRVWEVETGRCLK 423
           8*********9976699********************97 PP

Organism

Triticum aestivum

Functional Description
(View)

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Protein Sequence
(Fasta)

MGRADEEDKA ALSPGGDDAA DLSPDDSPWS DSAWSEDDDD DEVRPRSPTH PIDFLLSADG 60
LSLLPPQASL SFEDSGEGSG SDADSDGLEE EDDAAAEESD SSEDEVAPRN TVGDVPLKWY 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AGCGAGGAGC AAAGCGAAGC GAAGGAACAC TCTTTCCCCT CCGTCCGTCC CCTCCTAAAA 60
CCCTAGCAGC CCAGGCGGCG GCCTCCTCCC TCCTCCACCG CGCCACCCCG AGCCCCGCGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR028598--BOP1/Erb1
IPR012953--BOP1_N_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08145--BOP1NT
PF00400--WD40

SMART

SM01035--BOP1NT
SM00320--WD40

Gene Ontology

GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ame-011767	Astyanax mexicanus	47.96	9.00e-68	250.00
IUUC-Bdi-014895	Brachypodium distachyon	90.21	0.00e+00	1131.00
IUUC-Fal-037438	Ficedula albicollis	46.01	3.00e-130	459.00
IUUC-Gga-040631	Gallus gallus	49.12	2.00e-93	336.00
IUUC-Lpe-051135	Leersia perrieri	81.21	0.00e+00	974.00
IUUC-Mga-059645	Meleagris gallopavo	44.94	1.00e-57	216.00
IUUC-Mvi-060485	Microbotryum violaceum	41.97	7.00e-128	452.00
IUUC-Oin-079654	Oryza indica	86.60	0.00e+00	1046.00
IUUC-Ppa-095528	Physcomitrella patens	55.31	2.00e-149	523.00
IUUC-Pfo-096682	Poecilia formosa	44.44	7.00e-156	545.00
IUUC-Ptt-103929	Puccinia triticina	42.63	6.00e-125	442.00
IUUC-Sja-107908	Schizosaccharomyces japonicus	39.91	4.00e-127	449.00
IUUC-Smo-109604	Selaginella moellendorffii	59.08	0.00e+00	746.00
IUUC-Sit-110551	Setaria italica	85.64	0.00e+00	1055.00
IUUC-Sbi-113945	Sorghum bicolor	84.55	0.00e+00	1073.00
IUUC-Tur-126781	Triticum urartu	93.28	0.00e+00	1053.00
IUUC-Xma-133883	Xiphophorus maculatus	44.61	8.00e-152	531.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence