iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099353

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Zinc finger family protein

Genbank Nucleotide ID

CM000338

Gene Name

POPTRDRAFT_642904; POPTR_0002s01890g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0002s01890	POPTR_0002s01890.1	POPTR_0002s01890.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	3.80e-08	34.8	104	146

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledfkdg..plvlp.CgHvfhadClqkwpglknssskefrCPlCr 46
           Ca+Cl+d++ +   +++p C+H fh++C   w       sk+  CP+Cr
   Q: 104  CAVCLDDIESEqlARIVPgCNHGFHLECADTW------LSKHPVCPVCR 146
           ********55555667778*************......**********8 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MVTLTPPPIH CPTPSPPPLS FNSDASFTTG QNMLVSVLFA LFLPCVGMSV VFFIYICLLW 60
YAANNQPENI PLPVKTVTEK GLSSSELEKL PKVTGKELVL GTECAVCLDD IESEQLARIV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CCCGCAGCTC TCCCATCCTC TCATATCTAT ATTCCAACTT CTTTCCTCTA CTTTTGTCGC 60
AGCCCCTATA ATGCGCCATG GTCACACTCA CACCACCTCC TATTCACTGT CCCACTCCAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

pop:POPTR_0002s01890g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-006290	Arabidopsis lyrata	60.63	6.00e-39	152.00
IUUC-Ath-006964	Arabidopsis thaliana	57.97	3.00e-40	157.00
IUUC-Bdi-014085	Brachypodium distachyon	42.67	1.00e-13	68.20
IUUC-Bol-015170	Brassica oleracea	61.48	1.00e-37	147.00
IUUC-Bra-017135	Brassica rapa	58.27	6.00e-35	139.00
IUUC-Mtr-058722	Medicago truncatula	60.15	2.00e-45	173.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence