iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Gma-043756

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Ribosome biogenesis protein WDR12 homolog

Genbank Nucleotide ID

CM000834

Gene Name

LOC100818682; GLYMA_01G086000

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
GLYMA01G21660	GLYMA01G21660.1	GLYMA01G21660.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.40e-30	105.6	359	393

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sd.tllvsGsdDgtikvWDlrtg 33
           H ++v+++++  ++  +l+s+s+Dg++++WDlrt 
   Q: 359  HMSWVSACKWhdQSwFHLLSASYDGKVMLWDLRTA 393
           99********9744577***************986 PP

Organism

Glycine max

Functional Description
(View)

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Protein Sequence
(Fasta)

MNMNEESGEG SARRVQVRFV TKLGEPYKVP TTAIAIPADL ARFGLSSLVN ALLQSNDADH 60
QPEPFDFLID GEFVRMSLEQ FLLAKGISAE RILEIEYARA VAPRKEEDPS LHDDWVSAVD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CCACAAACAC TTTTTAATGC TTACAAATAT GACACCAATT CCCTTTAATA TTTGAAAAGA 60
AAAAAACTCA GGGGTATTAG GGTAATTTGA TCTAAATTCT AAAACCCATG GCAACTGAAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08154--NLE
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005654--C:nucleoplasm
GO:0070545--C:PeBoW complex
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000460--P:maturation of 5.8S rRNA
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000470--P:maturation of LSU-rRNA
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

KEGG

gmx:100818682

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000532	Aegilops tauschii	64.50	7.00e-168	583.00
IUUC-Ago-007864	Ashbya gossypii	32.73	1.00e-48	187.00
IUUC-Acl-008177	Aspergillus clavatus	32.85	1.00e-47	184.00
IUUC-Afl-008617	Aspergillus flavus	32.25	1.00e-44	173.00
IUUC-Afu-008752	Aspergillus fumigatus	32.05	2.00e-44	173.00
IUUC-Ang-009701	Aspergillus niger	32.66	1.00e-43	171.00
IUUC-Aor-009884	Aspergillus oryzae	32.48	8.00e-45	174.00
IUUC-Ate-010472	Aspergillus terreus	26.69	1.00e-15	77.00
IUUC-Bci-013953	Botrytis cinerea	29.78	6.00e-41	161.00
IUUC-Bra-016988	Brassica rapa	68.38	2.00e-172	598.00
IUUC-Cne-027063	Cryptococcus neoformans	26.75	6.00e-29	122.00
IUUC-Dse-031308	Dothistroma septosporum	32.31	2.00e-48	186.00
IUUC-Dme-032189	Drosophila melanogaster	32.04	1.00e-50	194.00
IUUC-Fox-037965	Fusarium oxysporum	27.11	1.00e-34	140.00
IUUC-Fso-038244	Fusarium solani	27.46	4.00e-34	139.00
IUUC-Ggr-040093	Gaeumannomyces graminis	26.45	6.00e-30	125.00
IUUC-Kpa-049304	Komagataella pastoris	29.04	3.00e-47	182.00
IUUC-Mor-057114	Magnaporthe oryzae	28.04	5.00e-42	165.00
IUUC-Mtr-058367	Medicago truncatula	83.18	0.00e+00	732.00
IUUC-Nfi-068260	Neosartorya fischeri	32.77	2.00e-45	177.00
IUUC-Ncr-068719	Neurospora crassa	29.62	4.00e-36	145.00
IUUC-Oba-075712	Oryza barthii	53.85	2.00e-127	449.00
IUUC-Obr-076721	Oryza brachyantha	62.64	7.00e-164	570.00
IUUC-Ogl-077229	Oryza glaberrima	62.47	4.00e-165	574.00
IUUC-Ogu-078977	Oryza glumaepatula	54.55	2.00e-127	449.00
IUUC-Oin-079683	Oryza indica	62.93	2.00e-164	572.00
IUUC-Olo-080291	Oryza longistaminata	54.13	8.00e-89	320.00
IUUC-Ome-081834	Oryza meridionalis	65.19	1.00e-165	576.00
IUUC-Osa-085767	Oryza sativa	62.93	2.00e-164	572.00
IUUC-Pma-094189	Petromyzon marinus	38.04	4.00e-67	248.00
IUUC-Ppe-101848	Prunus persica	71.00	0.00e+00	657.00
IUUC-Pgr-103637	Puccinia graminis	29.58	7.00e-40	158.00
IUUC-Ptt-103781	Puccinia triticina	29.08	1.00e-38	154.00
IUUC-Pte-104135	Pyrenophora teres	31.63	6.00e-43	170.00
IUUC-Sce-106401	Saccharomyces cerevisiae	31.89	9.00e-49	187.00
IUUC-Sja-107766	Schizosaccharomyces japonicus	28.38	5.00e-39	155.00
IUUC-Spo-108134	Schizosaccharomyces pombe	29.72	7.00e-40	158.00
IUUC-Ssl-108398	Sclerotinia sclerotiorum	31.08	2.00e-44	173.00
IUUC-Sit-110354	Setaria italica	64.42	3.00e-164	571.00
IUUC-Sbi-114193	Sorghum bicolor	62.62	6.00e-158	550.00
IUUC-Tre-121947	Trichoderma reesei	27.79	7.00e-38	151.00
IUUC-Tvi-122481	Trichoderma virens	27.25	4.00e-37	149.00
IUUC-Tae-123847	Triticum aestivum	64.50	7.00e-168	583.00
IUUC-Tur-126586	Triticum urartu	64.66	2.00e-154	538.00
IUUC-Vvi-131009	Vitis vinifera	73.78	0.00e+00	674.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence