iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Hvu-047526

Ensembl Protein ID

MLOC_58976.1

UniProt Accession

M0XD12; M0XD12_HORVV

Protein Name

Ribosome biogenesis protein BOP1 homolog

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
MLOC_58976	MLOC_58976.1	MLOC_58976.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	8.90e-14	52.2	362	400

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gH ++vt+l+  ++   ++sGs Dgti+vW++ tg++lk
   Q: 362  GHGGPVTSLSVeTTgQWIASGSSDGTIRVWEVETGRCLK 400
           8**********966699********************97 PP

Organism

Hordeum vulgare

Functional Description
(View)

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Protein Sequence
(Fasta)

MGRGEEEDKA VLSPGVEDDT ADLSADDSPW SDSALSEGED DDEASLSFED SGEGSDADSD 60
SDGLEEEDDA AAEESDSSED EVAPRNTVGD VPLNTWYKDE EHIGYDIEGR KIKKRDRDGR 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GGCTTTCTTC TTCCGTCCAT CCATTCGACC GAGGAGCAAA ACGAAGGAAC ACTCTTTCCC 60
CTCCGTCCGT CCCCTCCTAA AACCCTAGCA GCCCAGGCGG CGGCCTCCTC CCCTCCCTCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR028598--BOP1/Erb1
IPR012953--BOP1_N_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08145--BOP1NT
PF00400--WD40

SMART

SM01035--BOP1NT
SM00320--WD40

Gene Ontology

GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001158	Aegilops tauschii	89.43	0.00e+00	1037.00
IUUC-Aml-001507	Ailuropoda melanoleuca	42.86	9.00e-135	472.00
IUUC-Atr-003141	Amborella trichopoda	62.32	1.00e-155	541.00
IUUC-Apl-003545	Anas platyrhynchos	43.92	7.00e-130	456.00
IUUC-Aly-005649	Arabidopsis lyrata	64.16	0.00e+00	839.00
IUUC-Ath-007625	Arabidopsis thaliana	64.05	0.00e+00	816.00
IUUC-Ago-007958	Ashbya gossypii	39.69	9.00e-136	476.00
IUUC-Acl-008344	Aspergillus clavatus	41.42	4.00e-121	427.00
IUUC-Afl-008616	Aspergillus flavus	39.66	6.00e-121	427.00
IUUC-Afu-009083	Aspergillus fumigatus	41.02	2.00e-116	412.00
IUUC-Ani-009365	Aspergillus nidulans	40.65	5.00e-123	434.00
IUUC-Ang-009796	Aspergillus niger	40.34	2.00e-119	421.00
IUUC-Aor-010015	Aspergillus oryzae	39.57	6.00e-121	427.00
IUUC-Ate-010537	Aspergillus terreus	40.09	2.00e-123	434.00
IUUC-Ame-011767	Astyanax mexicanus	47.39	7.00e-69	252.00
IUUC-Bgr-012286	Blumeria graminis	42.34	2.00e-136	478.00
IUUC-Bta-013569	Bos taurus	46.20	2.00e-149	521.00
IUUC-Bci-013820	Botrytis cinerea	42.20	3.00e-126	444.00
IUUC-Bdi-014895	Brachypodium distachyon	90.39	0.00e+00	1130.00
IUUC-Bol-016099	Brassica oleracea	65.04	0.00e+00	850.00
IUUC-Bra-017174	Brassica rapa	64.94	0.00e+00	858.00
IUUC-Cel-018201	Caenorhabditis elegans	40.87	1.00e-125	442.00
IUUC-Cja-019009	Callithrix jacchus	40.58	1.00e-126	445.00
IUUC-Cfa-020173	Canis familiaris	41.29	2.00e-136	478.00
IUUC-Cpo-021796	Cavia porcellus	44.78	3.00e-147	514.00
IUUC-Cre-022650	Chlamydomonas reinhardtii	49.04	9.00e-165	572.00
IUUC-Csa-023440	Chlorocebus sabaeus	45.26	7.00e-153	533.00
IUUC-Cin-025782	Ciona intestinalis	44.79	1.00e-153	535.00
IUUC-Csv-026352	Ciona savignyi	42.79	4.00e-144	503.00
IUUC-Cgl-026393	Colletotrichum gloeosporioides	36.58	1.00e-99	355.00
IUUC-Cne-027004	Cryptococcus neoformans	42.47	2.00e-146	511.00
IUUC-Cme-027242	Cyanidioschyzon merolae	33.97	3.00e-103	367.00
IUUC-Dre-028658	Danio rerio	46.94	8.00e-161	559.00
IUUC-Dno-028883	Dasypus novemcinctus	45.10	1.00e-149	521.00
IUUC-Dor-031031	Dipodomys ordii	43.46	1.00e-147	515.00
IUUC-Dse-031443	Dothistroma septosporum	38.60	6.00e-121	427.00
IUUC-Dme-031786	Drosophila melanogaster	42.70	3.00e-151	527.00
IUUC-Eca-033677	Equus caballus	45.59	1.00e-148	518.00
IUUC-Eeu-035310	Erinaceus europaeus	41.26	3.00e-111	394.00
IUUC-Fca-035888	Felis catus	44.23	3.00e-145	507.00
IUUC-Fal-037438	Ficedula albicollis	44.88	5.00e-131	459.00
IUUC-Fox-037973	Fusarium oxysporum	40.66	2.00e-139	488.00
IUUC-Fso-038187	Fusarium solani	40.35	9.00e-137	479.00
IUUC-Gmo-039114	Gadus morhua	43.87	1.00e-138	485.00
IUUC-Ggr-039746	Gaeumannomyces graminis	41.07	3.00e-140	491.00
IUUC-Gga-040631	Gallus gallus	50.00	1.00e-94	338.00
IUUC-Gac-042582	Gasterosteus aculeatus	44.32	2.00e-144	504.00
IUUC-Gma-044215	Glycine max	62.01	0.00e+00	822.00
IUUC-Ggo-045587	Gorilla gorilla	45.10	7.00e-153	532.00
IUUC-Hsa-046319	Homo sapiens	45.10	5.00e-153	533.00
IUUC-Itr-048683	Ictidomys tridecemlineatus	45.26	1.00e-149	522.00
IUUC-Kpa-049221	Komagataella pastoris	39.38	5.00e-128	450.00
IUUC-Lch-049640	Latimeria chalumnae	46.55	8.00e-166	576.00
IUUC-Lpe-051135	Leersia perrieri	81.24	0.00e+00	971.00
IUUC-Loc-051930	Lepisosteus oculatus	47.66	6.00e-165	572.00
IUUC-Lma-053290	Leptosphaeria maculans	40.41	5.00e-124	437.00
IUUC-Laf-053903	Loxodonta africana	43.52	5.00e-134	470.00
IUUC-Mcc-055471	Macaca mulatta	44.94	2.00e-152	531.00
IUUC-Meu-056190	Macropus eugenii	46.07	1.00e-150	525.00
IUUC-Mor-057135	Magnaporthe oryzae	40.16	3.00e-132	464.00
IUUC-Mpo-057475	Magnaporthe poae	39.97	3.00e-131	461.00
IUUC-Mtr-058689	Medicago truncatula	59.73	0.00e+00	766.00
IUUC-Mla-059149	Melampsora laricipopulina	42.61	6.00e-142	496.00
IUUC-Mga-059645	Meleagris gallopavo	46.56	3.00e-59	219.00
IUUC-Mvi-060485	Microbotryum violaceum	41.90	5.00e-127	448.00
IUUC-Mmr-061674	Microcebus murinus	44.97	5.00e-147	513.00
IUUC-Mdo-062973	Monodelphis domestica	45.75	1.00e-156	545.00
IUUC-Mmu-064180	Mus musculus	45.07	7.00e-151	526.00
IUUC-Mac-064535	Musa acuminata	65.08	0.00e+00	666.00
IUUC-Mpu-066406	Mustela putorius furo	45.43	3.00e-154	537.00
IUUC-Mlu-067795	Myotis lucifugus	45.72	7.00e-143	499.00
IUUC-Nfi-068516	Neosartorya fischeri	41.18	2.00e-110	392.00
IUUC-Ncr-068767	Neurospora crassa	40.94	1.00e-124	439.00
IUUC-Opr-071084	Ochotona princeps	45.04	1.00e-62	232.00
IUUC-Ont-071614	Oreochromis niloticus	44.00	4.00e-155	540.00
IUUC-Oba-075980	Oryza barthii	80.77	0.00e+00	978.00
IUUC-Obr-076799	Oryza brachyantha	84.56	0.00e+00	1074.00
IUUC-Ogl-077134	Oryza glaberrima	85.54	0.00e+00	1049.00
IUUC-Ogu-078655	Oryza glumaepatula	81.85	0.00e+00	1014.00
IUUC-Oin-079654	Oryza indica	86.62	0.00e+00	1040.00
IUUC-Olo-080706	Oryza longistaminata	80.92	0.00e+00	983.00
IUUC-Ome-081716	Oryza meridionalis	66.26	0.00e+00	756.00
IUUC-Oni-082508	Oryza nivara	79.57	0.00e+00	975.00
IUUC-Opu-083707	Oryza punctata	81.40	0.00e+00	968.00
IUUC-Oru-084453	Oryza rufipogon	80.92	0.00e+00	983.00
IUUC-Osa-085811	Oryza sativa	85.54	0.00e+00	1049.00
IUUC-Ola-087361	Oryzias latipes	46.20	7.00e-159	553.00
IUUC-Oga-088015	Otolemur garnettii	44.62	1.00e-153	535.00
IUUC-Oar-090058	Ovis aries	50.31	4.00e-46	177.00
IUUC-Ptr-090631	Pan troglodytes	43.97	2.00e-56	211.00
IUUC-Pan-092306	Papio anubis	45.35	2.00e-152	531.00
IUUC-Pma-094622	Petromyzon marinus	46.07	1.00e-159	555.00
IUUC-Pno-094794	Phaeosphaeria nodorum	37.56	1.00e-113	402.00
IUUC-Ppa-095528	Physcomitrella patens	55.01	3.00e-148	517.00
IUUC-Pfo-096682	Poecilia formosa	44.91	9.00e-157	546.00
IUUC-Pab-097939	Pongo abelii	44.80	2.00e-138	484.00
IUUC-Pop-099043	Populus trichocarpa	69.45	0.00e+00	812.00
IUUC-Pca-100333	Procavia capensis	45.07	3.00e-151	527.00
IUUC-Ppe-102078	Prunus persica	63.53	0.00e+00	802.00
IUUC-Pgr-103525	Puccinia graminis	42.79	2.00e-130	459.00
IUUC-Ptt-103929	Puccinia triticina	42.72	3.00e-125	441.00
IUUC-Pte-104029	Pyrenophora teres	40.00	8.00e-133	466.00
IUUC-Pyt-104446	Pyrenophora triticirepentis	39.84	3.00e-132	464.00
IUUC-Rno-105248	Rattus norvegicus	45.72	2.00e-150	525.00
IUUC-Sce-106381	Saccharomyces cerevisiae	39.97	2.00e-135	474.00
IUUC-Sha-106519	Sarcophilus harrisii	46.94	5.00e-157	546.00
IUUC-Sja-107908	Schizosaccharomyces japonicus	40.06	5.00e-128	450.00
IUUC-Spo-108071	Schizosaccharomyces pombe	40.31	2.00e-127	448.00
IUUC-Smo-109604	Selaginella moellendorffii	58.83	0.00e+00	735.00
IUUC-Sit-110551	Setaria italica	85.83	0.00e+00	1053.00
IUUC-Sly-110970	Solanum lycopersicum	72.38	4.00e-147	513.00
IUUC-Stu-112593	Solanum tuberosum	68.40	0.00e+00	881.00
IUUC-Sar-113123	Sorex araneus	42.27	7.00e-64	236.00
IUUC-Sbi-113945	Sorghum bicolor	84.74	0.00e+00	1073.00
IUUC-Sre-115188	Sporisorium reilianum	40.60	6.00e-130	457.00
IUUC-Ssc-115352	Sus scrofa	44.66	2.00e-151	527.00
IUUC-Tru-117685	Takifugu rubripes	46.13	2.00e-158	551.00
IUUC-Tni-119982	Tetraodon nigroviridis	45.61	7.00e-155	539.00
IUUC-Tca-121664	Theobroma cacao	64.84	0.00e+00	874.00
IUUC-Tre-122229	Trichoderma reesei	41.15	2.00e-122	431.00
IUUC-Tvi-122576	Trichoderma virens	41.38	6.00e-126	443.00
IUUC-Tae-124110	Triticum aestivum	96.75	0.00e+00	1124.00
IUUC-Tur-126781	Triticum urartu	89.93	0.00e+00	1027.00
IUUC-Tme-127080	Tuber melanosporum	44.46	1.00e-151	528.00
IUUC-Ttr-128514	Tursiops truncatus	43.28	5.00e-95	340.00
IUUC-Uma-129556	Ustilago maydis	40.51	2.00e-127	448.00
IUUC-Vda-129715	Verticillium dahliae	41.69	5.00e-133	467.00
IUUC-Vvi-131211	Vitis vinifera	64.92	0.00e+00	816.00
IUUC-Xma-133883	Xiphophorus maculatus	45.07	1.00e-152	532.00
IUUC-Yli-134438	Yarrowia lipolytica	40.00	5.00e-125	440.00
IUUC-Zma-135341	Zea mays	74.85	0.00e+00	997.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence