iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sbi-113976

Ensembl Protein ID

Sb08g004620.1

UniProt Accession

A0A1B6PBM1; A0A1B6PBM1_SORBI

Genbank Protein ID

KXG23082.1

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000767

Gene Name

SORBI_008G054500

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb08g004620	Sb08g004620.1	Sb08g004620.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	7.40e-16	58.5	307	337

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 3    tdsvtclaf.sd.tllvsGsdDgtikvWDlr 31
           ++s+++++f +d  +l++ ++Dg ++v+D++
   Q: 307  QGSINAISFsPDgAYLATVGRDGYLRVFDFS 337
           579*******999****************75 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MAGAPGVGPG AGAGAGAGGG GGAAAGLKTY FKTPEGRYKL QYEKTHSAVL HYSHGGKTVS 60
QLTVAYLKEK PASQGSQPST PSSSSGMRSA AARLLGSGNG SKALSFGGSN GAGRAVAGSS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCGGGGG CGCCCGGGGT GGGGCCGGGC GCGGGTGCCG GTGCGGGTGC GGGAGGGGGT 60
GGCGGCGCCG CGGCGGGGCT CAAGACCTAC TTCAAGACGC CCGAGGGGAG GTACAAGCTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000844	Aegilops tauschii	72.38	7.00e-145	505.00
IUUC-Atr-002459	Amborella trichopoda	67.79	0.00e+00	645.00
IUUC-Aly-005705	Arabidopsis lyrata	65.38	0.00e+00	674.00
IUUC-Ath-007396	Arabidopsis thaliana	65.57	0.00e+00	677.00
IUUC-Acl-008348	Aspergillus clavatus	33.93	6.00e-53	201.00
IUUC-Afl-008642	Aspergillus flavus	34.58	2.00e-54	206.00
IUUC-Ani-009266	Aspergillus nidulans	32.14	3.00e-54	205.00
IUUC-Aor-010159	Aspergillus oryzae	34.58	2.00e-54	206.00
IUUC-Ate-010476	Aspergillus terreus	34.34	3.00e-54	205.00
IUUC-Bci-013753	Botrytis cinerea	33.58	3.00e-51	195.00
IUUC-Bdi-014307	Brachypodium distachyon	84.32	0.00e+00	804.00
IUUC-Bol-015990	Brassica oleracea	66.73	0.00e+00	690.00
IUUC-Bra-017842	Brassica rapa	52.80	1.00e-152	532.00
IUUC-Cho-024294	Choloepus hoffmanni	34.68	7.00e-36	144.00
IUUC-Cgl-026394	Colletotrichum gloeosporioides	33.00	5.00e-51	194.00
IUUC-Cne-026940	Cryptococcus neoformans	34.33	1.00e-34	140.00
IUUC-Dno-029016	Dasypus novemcinctus	34.02	1.00e-52	200.00
IUUC-Dor-030179	Dipodomys ordii	36.03	3.00e-52	199.00
IUUC-Dse-031362	Dothistroma septosporum	32.87	4.00e-54	205.00
IUUC-Fox-037668	Fusarium oxysporum	34.97	6.00e-18	84.70
IUUC-Fso-038140	Fusarium solani	32.91	7.00e-55	207.00
IUUC-Gac-042372	Gasterosteus aculeatus	34.97	2.00e-52	199.00
IUUC-Gma-043670	Glycine max	67.05	0.00e+00	676.00
IUUC-Lpe-051378	Leersia perrieri	88.53	0.00e+00	848.00
IUUC-Lma-053071	Leptosphaeria maculans	34.08	5.00e-48	185.00
IUUC-Mor-057249	Magnaporthe oryzae	32.18	6.00e-50	191.00
IUUC-Mtr-058649	Medicago truncatula	65.65	0.00e+00	630.00
IUUC-Mac-064899	Musa acuminata	70.32	0.00e+00	715.00
IUUC-Ncr-068904	Neurospora crassa	31.52	4.00e-51	195.00
IUUC-Nle-069233	Nomascus leucogenys	34.02	3.00e-53	202.00
IUUC-Oba-075876	Oryza barthii	82.22	0.00e+00	765.00
IUUC-Obr-076346	Oryza brachyantha	87.07	0.00e+00	830.00
IUUC-Ogl-077048	Oryza glaberrima	88.53	0.00e+00	850.00
IUUC-Ogu-078225	Oryza glumaepatula	86.06	0.00e+00	819.00
IUUC-Oin-079605	Oryza indica	88.34	0.00e+00	847.00
IUUC-Olo-080349	Oryza longistaminata	58.99	9.00e-97	345.00
IUUC-Oni-082472	Oryza nivara	85.88	0.00e+00	817.00
IUUC-Opu-083440	Oryza punctata	84.98	0.00e+00	835.00
IUUC-Oru-084205	Oryza rufipogon	82.22	0.00e+00	764.00
IUUC-Osa-086186	Oryza sativa	88.34	0.00e+00	847.00
IUUC-Olu-087793	Ostreococcus lucimarinus	31.62	1.00e-37	149.00
IUUC-Ppa-095812	Physcomitrella patens	55.13	8.00e-159	552.00
IUUC-Pop-099732	Populus trichocarpa	66.54	0.00e+00	651.00
IUUC-Ppe-101762	Prunus persica	63.06	0.00e+00	662.00
IUUC-Pte-104091	Pyrenophora teres	31.57	8.00e-53	201.00
IUUC-Pyt-104509	Pyrenophora triticirepentis	32.07	1.00e-52	200.00
IUUC-Sha-107220	Sarcophilus harrisii	35.86	7.00e-53	201.00
IUUC-Sja-107886	Schizosaccharomyces japonicus	29.87	5.00e-41	161.00
IUUC-Spo-108343	Schizosaccharomyces pombe	30.02	9.00e-45	174.00
IUUC-Smo-108846	Selaginella moellendorffii	59.30	2.00e-172	597.00
IUUC-Sit-110829	Setaria italica	94.62	0.00e+00	913.00
IUUC-Sre-115177	Sporisorium reilianum	44.29	3.00e-32	133.00
IUUC-Tgu-116514	Taeniopygia guttata	34.64	4.00e-46	178.00
IUUC-Tsy-119611	Tarsius syrichta	34.02	2.00e-53	202.00
IUUC-Tca-121339	Theobroma cacao	67.19	0.00e+00	671.00
IUUC-Tre-122206	Trichoderma reesei	32.26	9.00e-45	174.00
IUUC-Tvi-122377	Trichoderma virens	32.83	2.00e-46	179.00
IUUC-Tae-125451	Triticum aestivum	83.94	0.00e+00	820.00
IUUC-Tur-126428	Triticum urartu	69.67	2.00e-140	491.00
IUUC-Tme-126969	Tuber melanosporum	32.32	4.00e-55	208.00
IUUC-Uma-129485	Ustilago maydis	43.57	3.00e-32	132.00
IUUC-Vda-129875	Verticillium dahliae	30.75	2.00e-53	202.00
IUUC-Xma-134123	Xiphophorus maculatus	34.43	5.00e-53	201.00
IUUC-Yli-134475	Yarrowia lipolytica	30.33	1.00e-43	170.00
IUUC-Zma-135897	Zea mays	94.62	0.00e+00	903.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence