iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Vvi-130958

UUCD1 version

UUC-ViV-00934

Ensembl Protein ID

VIT_18s0001g13430.t01

UniProt Accession

F6GZQ1; F6GZQ1_VITVI

Genbank Protein ID

CCB45993.1

Protein Name

Coatomer subunit alpha

Genbank Nucleotide ID

FN595227

Gene Name

VIT_18s0001g13430

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
VIT_18s0001g13430	VIT_18s0001g13430.t01	VIT_18s0001g13430.t01

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	9.10e-37	124.1	50	85
UBD/Beta-Prp	5.80e-74	249.5	3	323

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sdtllvsGsdDgtikvWDlrtgvl 35
           H ++v++++f  s +l+vsG+dD +ikvW+++ +++
   Q: 50   HDGPVRGVHFhkSQPLFVSGGDDYKIKVWNYKLHRC 85
           99*********7559***************876666 PP

UBD/Beta-Prp

   S: 4    tlkghhksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlk 91
           t +++++++++ + f+ ++++++++  +g i++wd+++g+l+ ++ +h+++v+ v f+++++++v+g++D+ ikvw+++   c+ tl 
   Q: 3    TKFETKSNRVKGLSFHTKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKLHRCLFTLF 90
           67889999******************************************************************************** PP
   S: 92   ghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdl............. 166
           gh d++++++f+ +  ++vs+s+d+tir+w++++++ ++ +l+gh++ v+c+++hp+++l+vs+slD+tvr+Wd+             
   Q: 91   GHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTLMS-VLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIgalrkktsspadd 177
           **************************************9.************************************************ PP
   S: 167  .........ktgkllrtl............tgghtdsvyslsfdsngkelvsgsldgtvklwdlqtgec..vrtlnghtdnvksvrfs 231
                            +            +g h++ v++ sf+++ + +vsg++d++vklw +  ++   v+tl+gh +nv++v f+
   Q: 178  ilrlsqmntD-------FfggvdavvkyvlEG-HDRGVNWASFHPTLPLIVSGADDRQVKLWRMNDTKAweVDTLRGHMNNVSCVFFH 257
           **55555550.......455555555555365.********************************777668***************** PP
   S: 232  pnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvavlsfgdnvlvlgsedskvniwklkknep 299
            +++ +vs s+D+sir+Wd ++++ ++t+ +++++++  ++ +++ n l++g  ds   ++kl++++p
   Q: 258  ARQDVIVSNSEDKSIRVWDATKRTGIQTFRREHDRFWILTA-HPEMNLLAAG-HDSGMIVFKLERERP 323
           *****************************************.6666655555.689999999988765 PP

Organism

Vitis vinifera

Functional Description
(View)

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network.

Protein Sequence
(Fasta)

MLTKFETKSN RVKGLSFHTK RPWILASLHS GVIQLWDYRM GTLIDRFDEH DGPVRGVHFH 60
KSQPLFVSGG DDYKIKVWNY KLHRCLFTLF GHLDYIRTVQ FHHEYPWIVS ASDDQTIRIW 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CAAGACGATC CTCATTCTCT ATTTTTCCTT TCTTTGTAGA ATCTCCCTGA TCTGTGGTCT 60
AGCCTTAAGC TGCACCCCTC CCTGCTTATC CTACGCTCCC CTGACCGACG ATTTCCCATT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0931--ER-Golgi transport
KW-0333--Golgi apparatus
KW-0472--Membrane
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0813--Transport
KW-0853--WD repeat

Interpro

IPR016391--Coatomer_asu
IPR010714--Coatomer_asu_C
IPR006692--Coatomer_WD-assoc_reg
IPR020472--G-protein_beta_WD-40_rep
IPR011990--TPR-like_helical_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04053--Coatomer_WDAD
PF06957--COPI_C
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0030126--C:COPI vesicle coat
GO:0000139--C:Golgi membrane
GO:0005198--F:structural molecule activity
GO:0006888--P:ER to Golgi vesicle-mediated transport
GO:0006891--P:intra-Golgi vesicle-mediated transport
GO:0006886--P:intracellular protein transport
GO:0006890--P:retrograde vesicle-mediated transport, Golgi to ER

KEGG

vvi:100253944

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000064	Aegilops tauschii	78.67	0.00e+00	1993.00
IUUC-Aml-001758	Ailuropoda melanoleuca	54.54	0.00e+00	1358.00
IUUC-Atr-002493	Amborella trichopoda	83.09	0.00e+00	2038.00
IUUC-Apl-003385	Anas platyrhynchos	49.58	0.00e+00	1035.00
IUUC-Aca-005154	Anolis carolinensis	77.03	4.00e-94	335.00
IUUC-Aly-006020	Arabidopsis lyrata	82.84	0.00e+00	2049.00
IUUC-Ath-007058	Arabidopsis thaliana	82.25	0.00e+00	2050.00
IUUC-Ago-007992	Ashbya gossypii	42.96	0.00e+00	952.00
IUUC-Acl-008027	Aspergillus clavatus	56.14	0.00e+00	978.00
IUUC-Afl-008644	Aspergillus flavus	56.17	0.00e+00	976.00
IUUC-Afu-008964	Aspergillus fumigatus	47.81	0.00e+00	1132.00
IUUC-Ani-009379	Aspergillus nidulans	56.06	0.00e+00	986.00
IUUC-Ang-009756	Aspergillus niger	47.89	0.00e+00	1130.00
IUUC-Aor-010174	Aspergillus oryzae	56.17	0.00e+00	976.00
IUUC-Ate-010302	Aspergillus terreus	48.29	0.00e+00	1160.00
IUUC-Ame-011229	Astyanax mexicanus	54.26	0.00e+00	1327.00
IUUC-Bgr-012300	Blumeria graminis	47.82	0.00e+00	1100.00
IUUC-Bta-012524	Bos taurus	55.02	0.00e+00	1351.00
IUUC-Bci-013781	Botrytis cinerea	57.87	0.00e+00	972.00
IUUC-Bdi-014549	Brachypodium distachyon	78.61	0.00e+00	2019.00
IUUC-Bol-015925	Brassica oleracea	81.34	0.00e+00	2017.00
IUUC-Bra-016978	Brassica rapa	82.23	0.00e+00	2033.00
IUUC-Cel-018115	Caenorhabditis elegans	55.89	0.00e+00	949.00
IUUC-Cja-019107	Callithrix jacchus	54.18	0.00e+00	1339.00
IUUC-Cfa-020675	Canis familiaris	54.20	0.00e+00	1330.00
IUUC-Cpo-021813	Cavia porcellus	55.04	0.00e+00	1369.00
IUUC-Cre-022969	Chlamydomonas reinhardtii	71.39	0.00e+00	1266.00
IUUC-Csa-023523	Chlorocebus sabaeus	55.02	0.00e+00	1374.00
IUUC-Cho-024704	Choloepus hoffmanni	42.59	2.00e-174	606.00
IUUC-Cin-025572	Ciona intestinalis	50.93	0.00e+00	1238.00
IUUC-Csv-025864	Ciona savignyi	58.70	0.00e+00	992.00
IUUC-Cgl-026510	Colletotrichum gloeosporioides	56.20	0.00e+00	985.00
IUUC-Cne-027053	Cryptococcus neoformans	51.29	0.00e+00	1178.00
IUUC-Cme-027222	Cyanidioschyzon merolae	43.28	8.00e-146	511.00
IUUC-Dre-027421	Danio rerio	55.10	0.00e+00	1357.00
IUUC-Dno-029303	Dasypus novemcinctus	55.26	0.00e+00	1376.00
IUUC-Dor-030290	Dipodomys ordii	53.35	1.00e-164	573.00
IUUC-Dse-031543	Dothistroma septosporum	46.93	0.00e+00	1075.00
IUUC-Dme-031945	Drosophila melanogaster	61.01	0.00e+00	1035.00
IUUC-Ete-032873	Echinops telfairi	53.07	0.00e+00	1203.00
IUUC-Eca-033773	Equus caballus	54.17	0.00e+00	1330.00
IUUC-Eeu-034874	Erinaceus europaeus	41.76	0.00e+00	652.00
IUUC-Fca-035739	Felis catus	54.11	0.00e+00	1334.00
IUUC-Fal-037263	Ficedula albicollis	50.64	0.00e+00	1194.00
IUUC-Fox-037738	Fusarium oxysporum	47.54	0.00e+00	1135.00
IUUC-Fso-038153	Fusarium solani	48.25	0.00e+00	1138.00
IUUC-Gmo-039602	Gadus morhua	51.21	0.00e+00	1234.00
IUUC-Ggr-039931	Gaeumannomyces graminis	55.38	0.00e+00	970.00
IUUC-Gga-040590	Gallus gallus	54.82	0.00e+00	1357.00
IUUC-Gac-041318	Gasterosteus aculeatus	53.93	0.00e+00	1346.00
IUUC-Gma-043257	Glycine max	83.31	0.00e+00	2107.00
IUUC-Ggo-045029	Gorilla gorilla	54.70	0.00e+00	1366.00
IUUC-Hsa-046078	Homo sapiens	54.62	0.00e+00	1364.00
IUUC-Hvu-047556	Hordeum vulgare	79.26	0.00e+00	2025.00
IUUC-Itr-048881	Ictidomys tridecemlineatus	46.10	0.00e+00	762.00
IUUC-Kpa-049256	Komagataella pastoris	53.00	0.00e+00	909.00
IUUC-Lch-049706	Latimeria chalumnae	54.75	0.00e+00	1353.00
IUUC-Lpe-051316	Leersia perrieri	79.02	0.00e+00	1993.00
IUUC-Loc-051867	Lepisosteus oculatus	50.47	0.00e+00	816.00
IUUC-Lma-053138	Leptosphaeria maculans	56.35	0.00e+00	988.00
IUUC-Laf-053510	Loxodonta africana	55.18	0.00e+00	1382.00
IUUC-Mcc-055836	Macaca mulatta	54.71	0.00e+00	1362.00
IUUC-Meu-056238	Macropus eugenii	56.80	0.00e+00	773.00
IUUC-Mor-057172	Magnaporthe oryzae	46.95	0.00e+00	1114.00
IUUC-Mpo-057300	Magnaporthe poae	55.16	0.00e+00	972.00
IUUC-Mtr-058248	Medicago truncatula	83.26	0.00e+00	2108.00
IUUC-Mla-059019	Melampsora laricipopulina	57.67	0.00e+00	1048.00
IUUC-Mga-059499	Meleagris gallopavo	54.81	0.00e+00	1354.00
IUUC-Mvi-060336	Microbotryum violaceum	59.52	0.00e+00	1060.00
IUUC-Mmr-061102	Microcebus murinus	54.62	0.00e+00	1353.00
IUUC-Mdo-062594	Monodelphis domestica	55.77	0.00e+00	1399.00
IUUC-Mmu-063736	Mus musculus	54.70	0.00e+00	1360.00
IUUC-Mac-065398	Musa acuminata	75.27	0.00e+00	1878.00
IUUC-Mpu-066701	Mustela putorius furo	55.22	0.00e+00	1363.00
IUUC-Mlu-067392	Myotis lucifugus	55.18	0.00e+00	1351.00
IUUC-Nfi-068270	Neosartorya fischeri	56.27	0.00e+00	980.00
IUUC-Ncr-068892	Neurospora crassa	56.71	0.00e+00	984.00
IUUC-Nle-069634	Nomascus leucogenys	65.72	0.00e+00	940.00
IUUC-Opr-070952	Ochotona princeps	44.72	1.00e-174	606.00
IUUC-Ont-072488	Oreochromis niloticus	54.38	0.00e+00	1332.00
IUUC-Ocu-074211	Oryctolagus cuniculus	54.94	0.00e+00	1364.00
IUUC-Oba-074992	Oryza barthii	83.93	0.00e+00	1413.00
IUUC-Obr-076429	Oryza brachyantha	84.04	0.00e+00	1510.00
IUUC-Ogl-077364	Oryza glaberrima	84.52	0.00e+00	1516.00
IUUC-Ogu-078257	Oryza glumaepatula	84.40	0.00e+00	1514.00
IUUC-Oin-079274	Oryza indica	84.40	0.00e+00	1516.00
IUUC-Olo-080466	Oryza longistaminata	84.58	0.00e+00	1498.00
IUUC-Ome-081993	Oryza meridionalis	83.95	0.00e+00	1372.00
IUUC-Oni-082608	Oryza nivara	84.76	0.00e+00	1513.00
IUUC-Opu-083370	Oryza punctata	79.26	0.00e+00	2006.00
IUUC-Oru-084274	Oryza rufipogon	84.52	0.00e+00	1516.00
IUUC-Osa-085841	Oryza sativa	84.76	0.00e+00	1518.00
IUUC-Ola-086921	Oryzias latipes	54.13	0.00e+00	1336.00
IUUC-Olu-087639	Ostreococcus lucimarinus	62.52	0.00e+00	1560.00
IUUC-Oga-087991	Otolemur garnettii	52.02	0.00e+00	1268.00
IUUC-Oar-089590	Ovis aries	54.94	0.00e+00	1367.00
IUUC-Ptr-090808	Pan troglodytes	54.70	0.00e+00	1366.00
IUUC-Pan-092475	Papio anubis	54.89	0.00e+00	1367.00
IUUC-Psi-093044	Pelodiscus sinensis	54.31	0.00e+00	884.00
IUUC-Pno-094839	Phaeosphaeria nodorum	46.38	0.00e+00	1047.00
IUUC-Ppa-095785	Physcomitrella patens	70.83	0.00e+00	1810.00
IUUC-Pfo-097493	Poecilia formosa	54.62	0.00e+00	1332.00
IUUC-Pab-098497	Pongo abelii	55.02	0.00e+00	1374.00
IUUC-Pop-099992	Populus trichocarpa	86.78	0.00e+00	2127.00
IUUC-Pca-100413	Procavia capensis	61.15	0.00e+00	695.00
IUUC-Ppe-101392	Prunus persica	89.07	0.00e+00	2244.00
IUUC-Pva-102126	Pteropus vampyrus	52.45	0.00e+00	1288.00
IUUC-Pgr-103376	Puccinia graminis	58.39	0.00e+00	1041.00
IUUC-Ptt-103978	Puccinia triticina	52.37	0.00e+00	841.00
IUUC-Pte-104126	Pyrenophora teres	56.03	0.00e+00	944.00
IUUC-Pyt-104778	Pyrenophora triticirepentis	46.85	1.00e-178	619.00
IUUC-Rno-105428	Rattus norvegicus	54.94	0.00e+00	1366.00
IUUC-Sce-106464	Saccharomyces cerevisiae	42.02	0.00e+00	936.00
IUUC-Sha-107301	Sarcophilus harrisii	54.54	0.00e+00	1349.00
IUUC-Sja-107961	Schizosaccharomyces japonicus	45.27	0.00e+00	1066.00
IUUC-Spo-108217	Schizosaccharomyces pombe	44.59	0.00e+00	1050.00
IUUC-Ssl-108643	Sclerotinia sclerotiorum	57.85	0.00e+00	969.00
IUUC-Smo-108986	Selaginella moellendorffii	67.87	0.00e+00	1727.00
IUUC-Sit-109697	Setaria italica	80.18	0.00e+00	2013.00
IUUC-Sly-111759	Solanum lycopersicum	86.04	0.00e+00	2171.00
IUUC-Stu-112564	Solanum tuberosum	85.88	0.00e+00	2166.00
IUUC-Sar-113313	Sorex araneus	41.82	0.00e+00	643.00
IUUC-Sbi-114388	Sorghum bicolor	80.15	0.00e+00	2011.00
IUUC-Sre-115209	Sporisorium reilianum	55.44	0.00e+00	991.00
IUUC-Ssc-115933	Sus scrofa	55.02	0.00e+00	1367.00
IUUC-Tgu-117109	Taeniopygia guttata	43.69	4.00e-109	387.00
IUUC-Tru-117772	Takifugu rubripes	53.63	0.00e+00	1309.00
IUUC-Tsy-119105	Tarsius syrichta	52.23	0.00e+00	1035.00
IUUC-Tni-120556	Tetraodon nigroviridis	41.87	0.00e+00	889.00
IUUC-Tca-121046	Theobroma cacao	88.03	0.00e+00	2222.00
IUUC-Tre-121951	Trichoderma reesei	55.82	0.00e+00	976.00
IUUC-Tvi-122359	Trichoderma virens	47.63	0.00e+00	1140.00
IUUC-Tae-123611	Triticum aestivum	78.67	0.00e+00	1994.00
IUUC-Tur-126754	Triticum urartu	77.60	0.00e+00	1959.00
IUUC-Tme-127170	Tuber melanosporum	48.78	0.00e+00	1184.00
IUUC-Tbe-127882	Tupaia belangeri	68.39	1.00e-126	446.00
IUUC-Ttr-128217	Tursiops truncatus	52.93	0.00e+00	1297.00
IUUC-Uma-129337	Ustilago maydis	55.91	0.00e+00	991.00
IUUC-Vda-129828	Verticillium dahliae	54.38	0.00e+00	947.00
IUUC-Vpa-130537	Vicugna pacos	54.46	0.00e+00	1343.00
IUUC-Xtr-132857	Xenopus tropicalis	53.00	0.00e+00	1280.00
IUUC-Xma-133138	Xiphophorus maculatus	54.62	0.00e+00	1333.00
IUUC-Yli-134399	Yarrowia lipolytica	43.89	0.00e+00	989.00
IUUC-Zma-135612	Zea mays	78.01	0.00e+00	1996.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence