iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Ola-086967

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

BAAF04060906

Gene Name

usp39

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSORLG00000006325.1	ENSORLT00000007947.1	ENSORLP00000007946.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
DUB/USP	1.30e-47	163.0	162	491

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

DUB/USP

   S: 1    tGlkNlgNtCYmNSvLQcLsnipelrelllekkkeklneenpkepkgellkslqklfeelw..kskkkavsprellkalkkeaee.fsg 86
           +Gl+N+ +  Y N+vLQ+ sn+p+lr+++le+++ +  ++ p +    l++ + +l+++lw   + k +vsp+e+l+a+  ++++ f+ 
   Q: 162  VGLNNIKANDYANAVLQAFSNVPPLRNYFLEEENYRDIRRPPGDIMFLLVQRFGELMRKLWnpRNFKAHVSPHEMLQAVVLCSKKnFQI 250
           6******************************98888889999*******************999999**************99999*** PP
   S: 87   yeqqDaqEflaflldqleeelkkeknkpkeeeeeedkselsdeaeekkkkknkslisdlFqgqlk................sqikclec 159
           ++q Da +f++++l++++ +l                           +kk++s+++++Fqg+++                + + + e 
   Q: 251  TKQGDAVDFMTWFLNAMHGAL-------------------------GGTKKKPSILTKVFQGSMRifskklphpdlppeekEALLVTEE 314
           *********************.........................4577888888888888888888888888888888799999999 PP
   S: 160  dnvssreepfldlslpvpgkeetkke.........slqdcLesftkeeelegenkyycekckkkqeaekklklkklPevLilhLkRfsf 239
            +++ +e++fl l+l++p     k e          l ++L +f    e e    y++ k     +  k+++l+klP++Li+ +kRf  
   Q: 315  YQEQMSESTFLFLTLDLPTAPLYKDEkeqliipqvPLFNILGKFNGSTEKE----YKTYK----ENFLKRFQLTKLPPYLIFCIKRF-- 393
           9999**************777666664455566666666666666666665....44333....4589*******************.. PP
   S: 240  seeqksrekinkkvefple.LdlspfctspeekqkekkkYeLiavvvHsGslssGHYvayvkn.ekgkWllfdDskVtevkeeevleet 326
           ++++ + ek+ + v+fp++ +dl++++t++ ++ +++++Y+Lia vvH G++ +G Y  +v +  +gkW+++ D +Vt +  + +    
   Q: 394  TKNNFFVEKNPTIVNFPITnVDLREYLTEEAQATEKNTTYDLIANVVHDGKPTEGSYRIHVLHhGTGKWYEMQDLQVTDILPQMITL-- 480
           88889********************************************************9935666******************9.. PP
   S: 327  gstaYvlfYkrr 338
            s+aY+ ++kr+
   Q: 481  -SEAYIQIWKRQ 491
           .********986 PP

Organism

Oryzias latipes

Protein Sequence
(Fasta)

IVTRMSLKRE REEIEDDEDN EDEVTVKFRR GRVVEDRRSR HCPYLDTINR SVLDFDFEKL 60
CSISLSHINV YACLICGKYF QGRGQKSHAY THSVQFSHHV FLNLHTLKFY CLPDNYEIID 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATAGTTACAA GAATGTCTTT AAAGCGTGAA AGGGAGGAAA TAGAAGACGA CGAGGATAAC 60
GAAGACGAAG GTATGCTGAT TTGTCTCTTA CGTCCGTTTT TCGTTTTGTT AGCCAGCCAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001394--Peptidase_C19_UCH
IPR033809--USP39
IPR028889--USP_dom
IPR013083--Znf_RING/FYVE/PHD
IPR001607--Znf_UBP

PROSITE

PS50235--USP_3
PS50271--ZF_UBP

Pfam

PF00443--UCH
PF02148--zf-UBP

SMART

SM00290--ZnF_UBP

Gene Ontology

GO:0036459--F:thiol-dependent ubiquitinyl hydrolase activity
GO:0008270--F:zinc ion binding
GO:0048855--P:adenohypophysis morphogenesis
GO:0016579--P:protein deubiquitination
GO:0043484--P:regulation of RNA splicing
GO:0000245--P:spliceosomal complex assembly

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000483	Aegilops tauschii	52.49	1.00e-127	449.00
IUUC-Aml-001846	Ailuropoda melanoleuca	88.49	0.00e+00	865.00
IUUC-Atr-002758	Amborella trichopoda	51.36	6.00e-132	464.00
IUUC-Apl-003336	Anas platyrhynchos	82.46	3.00e-156	544.00
IUUC-Aca-004846	Anolis carolinensis	89.89	0.00e+00	833.00
IUUC-Aly-005683	Arabidopsis lyrata	51.80	3.00e-123	435.00
IUUC-Ath-007661	Arabidopsis thaliana	50.53	2.00e-121	429.00
IUUC-Ago-007802	Ashbya gossypii	31.02	9.00e-60	224.00
IUUC-Acl-008304	Aspergillus clavatus	41.87	4.00e-91	328.00
IUUC-Afl-008735	Aspergillus flavus	58.82	6.00e-40	158.00
IUUC-Afu-009100	Aspergillus fumigatus	47.19	5.00e-90	325.00
IUUC-Ani-009138	Aspergillus nidulans	48.66	3.00e-94	338.00
IUUC-Ang-009661	Aspergillus niger	44.87	3.00e-96	345.00
IUUC-Aor-010235	Aspergillus oryzae	38.42	2.00e-79	290.00
IUUC-Ate-010346	Aspergillus terreus	37.23	1.00e-73	270.00
IUUC-Ame-011688	Astyanax mexicanus	92.87	0.00e+00	876.00
IUUC-Bgr-011998	Blumeria graminis	46.93	2.00e-115	409.00
IUUC-Bta-013407	Bos taurus	88.49	0.00e+00	863.00
IUUC-Bci-013977	Botrytis cinerea	46.96	3.00e-114	405.00
IUUC-Bdi-014361	Brachypodium distachyon	52.27	2.00e-131	462.00
IUUC-Bol-016317	Brassica oleracea	50.42	4.00e-121	427.00
IUUC-Bra-017952	Brassica rapa	50.96	4.00e-122	431.00
IUUC-Cel-018491	Caenorhabditis elegans	64.18	0.00e+00	629.00
IUUC-Cja-019134	Callithrix jacchus	88.49	0.00e+00	864.00
IUUC-Cfa-020098	Canis familiaris	88.49	0.00e+00	863.00
IUUC-Cpo-021595	Cavia porcellus	88.49	0.00e+00	862.00
IUUC-Cre-022886	Chlamydomonas reinhardtii	50.00	3.00e-31	126.00
IUUC-Csa-024121	Chlorocebus sabaeus	88.49	0.00e+00	863.00
IUUC-Cho-025057	Choloepus hoffmanni	70.44	3.00e-79	288.00
IUUC-Cin-025473	Ciona intestinalis	62.26	1.00e-62	232.00
IUUC-Csv-025815	Ciona savignyi	80.58	4.00e-120	424.00
IUUC-Cgl-026416	Colletotrichum gloeosporioides	43.32	6.00e-109	387.00
IUUC-Cne-026802	Cryptococcus neoformans	43.23	9.00e-103	367.00
IUUC-Dre-027870	Danio rerio	94.77	0.00e+00	883.00
IUUC-Dno-029655	Dasypus novemcinctus	88.27	0.00e+00	863.00
IUUC-Dor-030762	Dipodomys ordii	88.49	0.00e+00	862.00
IUUC-Dse-031441	Dothistroma septosporum	44.52	8.00e-110	390.00
IUUC-Dme-032101	Drosophila melanogaster	64.47	9.00e-180	622.00
IUUC-Ete-032841	Echinops telfairi	85.07	0.00e+00	825.00
IUUC-Eca-033463	Equus caballus	88.49	0.00e+00	863.00
IUUC-Eeu-034438	Erinaceus europaeus	64.39	2.00e-168	585.00
IUUC-Fca-035774	Felis catus	88.49	0.00e+00	864.00
IUUC-Fal-036988	Ficedula albicollis	88.41	0.00e+00	865.00
IUUC-Fox-037895	Fusarium oxysporum	44.92	2.00e-106	379.00
IUUC-Fso-038450	Fusarium solani	46.00	1.00e-107	383.00
IUUC-Gmo-038874	Gadus morhua	90.97	0.00e+00	867.00
IUUC-Ggr-040115	Gaeumannomyces graminis	43.13	3.00e-102	365.00
IUUC-Gac-041650	Gasterosteus aculeatus	93.80	0.00e+00	912.00
IUUC-Gma-043697	Glycine max	52.41	6.00e-134	471.00
IUUC-Ggo-044707	Gorilla gorilla	82.73	0.00e+00	789.00
IUUC-Hsa-046041	Homo sapiens	88.49	0.00e+00	863.00
IUUC-Hvu-047816	Hordeum vulgare	50.86	1.00e-120	426.00
IUUC-Itr-048945	Ictidomys tridecemlineatus	86.69	1.00e-174	605.00
IUUC-Lch-050419	Latimeria chalumnae	90.63	0.00e+00	875.00
IUUC-Lpe-051593	Leersia perrieri	53.62	2.00e-135	475.00
IUUC-Loc-052930	Lepisosteus oculatus	92.24	0.00e+00	882.00
IUUC-Lma-053256	Leptosphaeria maculans	46.32	6.00e-113	400.00
IUUC-Laf-053555	Loxodonta africana	88.27	0.00e+00	858.00
IUUC-Mcc-055630	Macaca mulatta	88.49	0.00e+00	863.00
IUUC-Meu-056579	Macropus eugenii	85.71	1.00e-158	552.00
IUUC-Mor-057078	Magnaporthe oryzae	44.54	5.00e-106	377.00
IUUC-Mpo-057607	Magnaporthe poae	37.71	2.00e-83	303.00
IUUC-Mtr-058644	Medicago truncatula	52.79	9.00e-132	463.00
IUUC-Mla-059120	Melampsora laricipopulina	42.17	5.00e-99	355.00
IUUC-Mvi-060429	Microbotryum violaceum	46.00	3.00e-70	259.00
IUUC-Mmr-061313	Microcebus murinus	88.27	0.00e+00	861.00
IUUC-Mdo-062801	Monodelphis domestica	88.70	0.00e+00	865.00
IUUC-Mmu-064424	Mus musculus	88.70	0.00e+00	878.00
IUUC-Mac-065115	Musa acuminata	51.40	1.00e-129	456.00
IUUC-Mpu-065980	Mustela putorius furo	89.32	0.00e+00	759.00
IUUC-Mlu-067007	Myotis lucifugus	88.49	0.00e+00	865.00
IUUC-Nfi-068274	Neosartorya fischeri	41.11	4.00e-90	325.00
IUUC-Ncr-068829	Neurospora crassa	46.98	2.00e-107	382.00
IUUC-Nle-069171	Nomascus leucogenys	88.84	0.00e+00	859.00
IUUC-Opr-070494	Ochotona princeps	81.66	0.00e+00	771.00
IUUC-Ont-072290	Oreochromis niloticus	95.31	0.00e+00	941.00
IUUC-Oan-073099	Ornithorhynchus anatinus	88.70	0.00e+00	859.00
IUUC-Ocu-074642	Oryctolagus cuniculus	88.49	0.00e+00	863.00
IUUC-Oba-075886	Oryza barthii	53.62	2.00e-135	475.00
IUUC-Obr-076220	Oryza brachyantha	53.40	7.00e-136	477.00
IUUC-Ogl-077682	Oryza glaberrima	53.62	9.00e-136	476.00
IUUC-Ogu-078492	Oryza glumaepatula	53.40	7.00e-135	474.00
IUUC-Oin-079956	Oryza indica	53.62	1.00e-135	476.00
IUUC-Olo-080239	Oryza longistaminata	47.98	1.00e-106	381.00
IUUC-Ome-081573	Oryza meridionalis	53.62	6.00e-136	477.00
IUUC-Oni-082975	Oryza nivara	53.62	1.00e-135	476.00
IUUC-Opu-083724	Oryza punctata	53.83	7.00e-136	477.00
IUUC-Oru-084566	Oryza rufipogon	53.62	1.00e-135	476.00
IUUC-Osa-086008	Oryza sativa	53.62	2.00e-135	475.00
IUUC-Olu-087614	Ostreococcus lucimarinus	43.36	1.00e-99	356.00
IUUC-Oga-088047	Otolemur garnettii	74.35	2.00e-160	558.00
IUUC-Oar-089393	Ovis aries	88.49	0.00e+00	864.00
IUUC-Ptr-090561	Pan troglodytes	88.49	0.00e+00	863.00
IUUC-Pan-091812	Papio anubis	88.49	0.00e+00	864.00
IUUC-Psi-093507	Pelodiscus sinensis	89.20	1.00e-149	521.00
IUUC-Pno-095104	Phaeosphaeria nodorum	46.10	1.00e-110	393.00
IUUC-Ppa-095995	Physcomitrella patens	53.66	1.00e-137	483.00
IUUC-Pfo-096754	Poecilia formosa	96.29	0.00e+00	932.00
IUUC-Pab-098053	Pongo abelii	88.49	0.00e+00	863.00
IUUC-Pop-099230	Populus trichocarpa	51.56	5.00e-135	474.00
IUUC-Pca-100407	Procavia capensis	80.81	0.00e+00	766.00
IUUC-Ppe-101699	Prunus persica	52.23	5.00e-133	468.00
IUUC-Pva-103159	Pteropus vampyrus	86.14	0.00e+00	816.00
IUUC-Pgr-103433	Puccinia graminis	42.42	3.00e-105	375.00
IUUC-Ptt-103701	Puccinia triticina	39.67	2.00e-93	336.00
IUUC-Pte-104281	Pyrenophora teres	46.52	2.00e-112	399.00
IUUC-Pyt-104714	Pyrenophora triticirepentis	46.52	3.00e-112	398.00
IUUC-Rno-105531	Rattus norvegicus	88.91	0.00e+00	880.00
IUUC-Sce-106368	Saccharomyces cerevisiae	30.77	3.00e-47	182.00
IUUC-Sha-107093	Sarcophilus harrisii	88.89	0.00e+00	861.00
IUUC-Sja-108004	Schizosaccharomyces japonicus	43.94	5.00e-115	407.00
IUUC-Spo-108018	Schizosaccharomyces pombe	45.73	2.00e-112	399.00
IUUC-Ssl-108460	Sclerotinia sclerotiorum	44.71	6.00e-106	377.00
IUUC-Smo-108892	Selaginella moellendorffii	53.19	1.00e-134	473.00
IUUC-Sit-110782	Setaria italica	53.33	7.00e-135	474.00
IUUC-Sly-111308	Solanum lycopersicum	53.00	4.00e-140	491.00
IUUC-Stu-112447	Solanum tuberosum	53.21	3.00e-141	494.00
IUUC-Sar-113352	Sorex araneus	82.00	0.00e+00	687.00
IUUC-Sbi-114806	Sorghum bicolor	53.88	5.00e-134	471.00
IUUC-Sre-115059	Sporisorium reilianum	40.19	9.00e-94	337.00
IUUC-Ssc-115677	Sus scrofa	85.34	3.00e-173	601.00
IUUC-Tru-118478	Takifugu rubripes	92.46	0.00e+00	940.00
IUUC-Tsy-119082	Tarsius syrichta	77.86	0.00e+00	645.00
IUUC-Tni-120419	Tetraodon nigroviridis	91.68	0.00e+00	919.00
IUUC-Tca-121294	Theobroma cacao	52.20	9.00e-140	490.00
IUUC-Tre-121962	Trichoderma reesei	44.83	2.00e-102	365.00
IUUC-Tvi-122280	Trichoderma virens	44.71	3.00e-110	392.00
IUUC-Tae-124442	Triticum aestivum	53.56	1.00e-133	470.00
IUUC-Tur-126551	Triticum urartu	53.56	1.00e-133	469.00
IUUC-Tme-126959	Tuber melanosporum	46.84	5.00e-117	414.00
IUUC-Tbe-127737	Tupaia belangeri	89.16	0.00e+00	823.00
IUUC-Ttr-129211	Tursiops truncatus	88.80	5.00e-136	478.00
IUUC-Uma-129591	Ustilago maydis	39.51	2.00e-97	349.00
IUUC-Vda-129674	Verticillium dahliae	42.92	6.00e-95	341.00
IUUC-Vpa-130793	Vicugna pacos	83.75	0.00e+00	759.00
IUUC-Xtr-132430	Xenopus tropicalis	87.42	0.00e+00	851.00
IUUC-Xma-133515	Xiphophorus maculatus	96.02	0.00e+00	919.00
IUUC-Yli-134488	Yarrowia lipolytica	37.53	1.00e-76	280.00
IUUC-Zma-134748	Zea mays	53.86	5.00e-135	474.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence