iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Hvu-047729

Ensembl Protein ID

MLOC_37725.2

UniProt Accession

M0VVW4; M0VVW4_HORVV

Protein Name

Katanin p80 WD40 repeat-containing subunit B1 homolog

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
MLOC_37725	MLOC_37725.3	MLOC_37725.3
MLOC_37725	MLOC_37725.1	MLOC_37725.1
MLOC_37725	MLOC_37725.4	MLOC_37725.4
MLOC_37725	MLOC_37725.2	MLOC_37725.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.00e-38	129.8	142	180
UBD/Beta-Prp	1.20e-59	203.0	10	186

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gH + + +++f +d + +v+G+ D+ +kvWDl+ g+ll+
   Q: 142  GHRGAIKSIRFtPDgRWIVTGGEDNIVKVWDLTAGKLLH 180
           8***********9999*******************9986 PP

UBD/Beta-Prp

   S: 87   vhtlkghedsvlslsfsp.sgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtds 182
           ++ + +h+++v+sl++ + s+ ++++G++dr +++w + +++ l   lsgh+++v  v+++  + l+ +Gs ++ ++lWdl+ +k++r ltg h +s
   Q: 10   FQEFVAHDAEVRSLAIGKkSSRVFITGGSDRNVNLWAIGKQTPLL-SLSGHTSSVEAVEFDTAEVLVLAGSSNGSIKLWDLEEAKVVRSLTG-HRSS 104
           667789************666************************.*********************************************9.**** PP
   S: 183  vyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhn 264
            + ++f++ g++++sgs d+++k+wd++++ c++t++gh+  +ks+rf+p++ ++v+g++D+ +++Wdl+ g+ll+ ++ h 
   Q: 105  CTAVEFHPFGEFFASGSSDTDLKIWDIKKKGCLHTYKGHRGAIKSIRFTPDGRWIVTGGEDNIVKVWDLTAGKLLHDFKFHS 186
           ****************************************************************************998775 PP

Organism

Hordeum vulgare

Functional Description
(View)

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.

Protein Sequence
(Fasta)

MDPEKRGYKF QEFVAHDAEV RSLAIGKKSS RVFITGGSDR NVNLWAIGKQ TPLLSLSGHT 60
SSVEAVEFDT AEVLVLAGSS NGSIKLWDLE EAKVVRSLTG HRSSCTAVEF HPFGEFFASG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GGGAGGGGGG ATGGACCCGG AGAAGCGCGG CTACAAGTTC CGTATCCCTT TTAGTTTTTA 60
CCTTTCTTGC TTACGCTCCG AGAGCTGTTC TTGGCTCGCG CTGTTCTTGG TTCGATTTAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0493--Microtubule
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0051013--P:microtubule severing

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000869	Aegilops tauschii	83.21	0.00e+00	1088.00
IUUC-Bdi-014531	Brachypodium distachyon	83.41	0.00e+00	1052.00
IUUC-Bol-015355	Brassica oleracea	70.50	3.00e-146	511.00
IUUC-Bra-017265	Brassica rapa	66.95	1.00e-146	513.00
IUUC-Cne-027087	Cryptococcus neoformans	27.22	3.00e-31	127.00
IUUC-Cme-027305	Cyanidioschyzon merolae	31.86	5.00e-22	98.20
IUUC-Dse-031558	Dothistroma septosporum	30.18	2.00e-28	119.00
IUUC-Mac-065245	Musa acuminata	53.83	0.00e+00	630.00
IUUC-Ncr-068688	Neurospora crassa	31.39	3.00e-28	118.00
IUUC-Oba-075016	Oryza barthii	75.42	0.00e+00	867.00
IUUC-Obr-076138	Oryza brachyantha	77.95	0.00e+00	1013.00
IUUC-Ogl-077401	Oryza glaberrima	76.46	0.00e+00	978.00
IUUC-Ogu-078062	Oryza glumaepatula	73.56	0.00e+00	965.00
IUUC-Oin-080042	Oryza indica	73.41	0.00e+00	963.00
IUUC-Olo-080713	Oryza longistaminata	76.10	0.00e+00	871.00
IUUC-Ome-081192	Oryza meridionalis	74.59	0.00e+00	794.00
IUUC-Oni-082473	Oryza nivara	73.56	0.00e+00	959.00
IUUC-Opu-083293	Oryza punctata	70.30	0.00e+00	864.00
IUUC-Oru-085183	Oryza rufipogon	73.26	0.00e+00	961.00
IUUC-Osa-085801	Oryza sativa	76.62	0.00e+00	979.00
IUUC-Pno-094815	Phaeosphaeria nodorum	29.17	2.00e-26	112.00
IUUC-Pop-100006	Populus trichocarpa	50.16	3.00e-159	554.00
IUUC-Ppe-101697	Prunus persica	48.85	2.00e-146	511.00
IUUC-Pte-104275	Pyrenophora teres	32.76	4.00e-31	128.00
IUUC-Pyt-104438	Pyrenophora triticirepentis	32.76	8.00e-31	127.00
IUUC-Sit-110364	Setaria italica	76.24	0.00e+00	939.00
IUUC-Sbi-114389	Sorghum bicolor	73.80	0.00e+00	912.00
IUUC-Tae-125438	Triticum aestivum	95.63	0.00e+00	1195.00
IUUC-Tur-126181	Triticum urartu	90.96	0.00e+00	1160.00
IUUC-Tme-127031	Tuber melanosporum	30.58	2.00e-29	122.00
IUUC-Zma-135921	Zea mays	76.43	0.00e+00	968.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence