iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Acl-008177

Ensembl Protein ID

CADACLAP00004707

UniProt Accession

A1CH75; YTM1_ASPCL

Genbank Protein ID

EAW10230.1

Protein Name

Ribosome biogenesis protein ytm1

Genbank Nucleotide ID

DS027054

Gene Name

ACLA_046950; ytm1

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
CADACLAG00004808	CADACLAT00004808	CADACLAP00004707

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.10e-26	90.7	384	417

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tl.lvsGsdDgtikvWDlr 31
           gHt+ v +la  +  t+ l+sGs+Dgt+++WD+r
   Q: 384  GHTNAVVSLARdPHsTYgLISGSHDGTCRIWDIR 417
           899999999988555778**************87 PP

Organism

Aspergillus clavatus

Functional Description
(View)

Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.

Protein Sequence
(Fasta)

MEDIQNSASN ADLSAAQRQV RVQLTSKQED IALPDGTGPI LVPTGLRRYA LSTLVNNLLS 60
NDKPIPFEFL INGTFLRTSI DEYLTANGIS AETTLEIEYV RALIPPLHIA SFQHDDWVSS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGAGGACA TTCAGAATTC CGCGTCCAAT GCAGATTTGT CTGCTGCTCA GCGACAGGTT 60
CGTGTGCAGC TTACCAGCAA GCAAGAAGAT ATTGCGCTGC CAGACGGCAC TGGTCCAATT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR002469--Peptidase_S9B_N
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08154--NLE
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0000790--C:nuclear chromatin
GO:0005654--C:nucleoplasm
GO:0070545--C:PeBoW complex
GO:0030687--C:preribosome, large subunit precursor
GO:0051276--P:chromosome organization
GO:0042273--P:ribosomal large subunit biogenesis
GO:0006364--P:rRNA processing

KEGG

act:ACLA_046950

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000532	Aegilops tauschii	30.80	1.00e-46	178.00
IUUC-Aml-001997	Ailuropoda melanoleuca	29.67	2.00e-37	148.00
IUUC-Atr-002544	Amborella trichopoda	28.85	4.00e-40	156.00
IUUC-Apl-003981	Anas platyrhynchos	30.60	1.00e-39	155.00
IUUC-Aca-004370	Anolis carolinensis	29.92	5.00e-44	170.00
IUUC-Aly-006455	Arabidopsis lyrata	28.95	1.00e-45	175.00
IUUC-Ath-006669	Arabidopsis thaliana	31.16	1.00e-41	162.00
IUUC-Ago-007864	Ashbya gossypii	42.47	1.00e-100	358.00
IUUC-Afl-008617	Aspergillus flavus	85.45	0.00e+00	770.00
IUUC-Afu-008752	Aspergillus fumigatus	91.53	0.00e+00	768.00
IUUC-Ani-009136	Aspergillus nidulans	84.73	0.00e+00	763.00
IUUC-Ang-009701	Aspergillus niger	86.88	0.00e+00	752.00
IUUC-Aor-009884	Aspergillus oryzae	85.66	0.00e+00	775.00
IUUC-Ate-010472	Aspergillus terreus	86.36	2.00e-147	513.00
IUUC-Ame-011432	Astyanax mexicanus	28.22	9.00e-44	169.00
IUUC-Bgr-012218	Blumeria graminis	57.05	8.00e-146	508.00
IUUC-Bta-012829	Bos taurus	28.95	5.00e-38	150.00
IUUC-Bci-013953	Botrytis cinerea	57.32	5.00e-156	542.00
IUUC-Bdi-014351	Brachypodium distachyon	31.47	2.00e-43	167.00
IUUC-Bol-016514	Brassica oleracea	32.31	1.00e-44	172.00
IUUC-Bra-016988	Brassica rapa	32.31	8.00e-45	172.00
IUUC-Cel-018569	Caenorhabditis elegans	25.94	1.00e-25	108.00
IUUC-Cja-019468	Callithrix jacchus	29.71	1.00e-37	149.00
IUUC-Cfa-020471	Canis familiaris	28.13	9.00e-35	139.00
IUUC-Cpo-022260	Cavia porcellus	28.95	9.00e-37	145.00
IUUC-Cre-022614	Chlamydomonas reinhardtii	34.55	3.00e-49	187.00
IUUC-Csa-023989	Chlorocebus sabaeus	29.95	3.00e-37	147.00
IUUC-Cho-024426	Choloepus hoffmanni	27.56	1.00e-27	115.00
IUUC-Cin-025789	Ciona intestinalis	27.23	7.00e-37	146.00
IUUC-Cgl-026562	Colletotrichum gloeosporioides	51.31	2.00e-35	140.00
IUUC-Cne-027063	Cryptococcus neoformans	25.45	1.00e-31	129.00
IUUC-Dre-027907	Danio rerio	29.41	1.00e-44	172.00
IUUC-Dno-029225	Dasypus novemcinctus	29.71	2.00e-37	148.00
IUUC-Dor-031082	Dipodomys ordii	27.14	9.00e-16	76.30
IUUC-Dse-031308	Dothistroma septosporum	50.75	7.00e-131	458.00
IUUC-Dme-032189	Drosophila melanogaster	26.65	5.00e-37	146.00
IUUC-Ete-032247	Echinops telfairi	27.23	5.00e-32	130.00
IUUC-Eca-034285	Equus caballus	28.95	6.00e-38	149.00
IUUC-Eeu-035322	Erinaceus europaeus	26.81	4.00e-32	130.00
IUUC-Fca-036114	Felis catus	29.67	3.00e-38	150.00
IUUC-Fal-036891	Ficedula albicollis	30.13	2.00e-33	134.00
IUUC-Fox-037965	Fusarium oxysporum	51.69	8.00e-132	461.00
IUUC-Fso-038244	Fusarium solani	52.29	5.00e-132	462.00
IUUC-Gmo-039040	Gadus morhua	28.31	2.00e-44	171.00
IUUC-Ggr-040093	Gaeumannomyces graminis	47.57	1.00e-102	364.00
IUUC-Gga-040610	Gallus gallus	30.69	1.00e-41	162.00
IUUC-Gac-042117	Gasterosteus aculeatus	29.18	8.00e-42	162.00
IUUC-Gma-043756	Glycine max	33.57	2.00e-49	187.00
IUUC-Ggo-045179	Gorilla gorilla	30.43	3.00e-39	154.00
IUUC-Hsa-046114	Homo sapiens	30.19	5.00e-38	150.00
IUUC-Hvu-047331	Hordeum vulgare	29.93	1.00e-38	151.00
IUUC-Itr-048275	Ictidomys tridecemlineatus	29.16	8.00e-37	145.00
IUUC-Kpa-049304	Komagataella pastoris	43.69	7.00e-112	395.00
IUUC-Lch-050655	Latimeria chalumnae	27.27	6.00e-28	116.00
IUUC-Lpe-051675	Leersia perrieri	30.18	1.00e-43	169.00
IUUC-Loc-052868	Lepisosteus oculatus	28.90	5.00e-42	163.00
IUUC-Lma-053258	Leptosphaeria maculans	52.71	6.00e-142	497.00
IUUC-Laf-053993	Loxodonta africana	29.24	1.00e-38	152.00
IUUC-Mcc-055128	Macaca mulatta	24.09	4.00e-22	97.10
IUUC-Meu-056501	Macropus eugenii	29.72	1.00e-33	135.00
IUUC-Mor-057114	Magnaporthe oryzae	50.42	3.00e-132	462.00
IUUC-Mpo-057463	Magnaporthe poae	45.54	2.00e-44	169.00
IUUC-Mtr-058367	Medicago truncatula	31.99	3.00e-44	171.00
IUUC-Mla-059107	Melampsora laricipopulina	30.30	3.00e-46	177.00
IUUC-Mga-059745	Meleagris gallopavo	30.69	3.00e-41	160.00
IUUC-Mvi-060362	Microbotryum violaceum	34.11	2.00e-23	102.00
IUUC-Mdo-062257	Monodelphis domestica	29.41	6.00e-40	156.00
IUUC-Mmu-063546	Mus musculus	29.44	2.00e-39	155.00
IUUC-Mac-065540	Musa acuminata	30.75	1.00e-41	161.00
IUUC-Mpu-066284	Mustela putorius furo	29.74	2.00e-38	151.00
IUUC-Mlu-067241	Myotis lucifugus	28.95	3.00e-38	150.00
IUUC-Nfi-068260	Neosartorya fischeri	93.01	0.00e+00	797.00
IUUC-Ncr-068719	Neurospora crassa	53.96	2.00e-134	470.00
IUUC-Nle-068981	Nomascus leucogenys	29.95	4.00e-37	147.00
IUUC-Opr-071218	Ochotona princeps	27.25	8.00e-37	145.00
IUUC-Ont-071646	Oreochromis niloticus	29.38	2.00e-39	154.00
IUUC-Oan-073453	Ornithorhynchus anatinus	27.64	7.00e-45	172.00
IUUC-Ocu-074008	Oryctolagus cuniculus	28.47	6.00e-39	153.00
IUUC-Oba-075712	Oryza barthii	27.29	4.00e-31	127.00
IUUC-Obr-076721	Oryza brachyantha	30.62	4.00e-44	170.00
IUUC-Ogl-077229	Oryza glaberrima	30.43	2.00e-45	174.00
IUUC-Ogu-078977	Oryza glumaepatula	27.29	2.00e-31	128.00
IUUC-Oin-079683	Oryza indica	30.43	9.00e-46	175.00
IUUC-Olo-080291	Oryza longistaminata	28.66	3.00e-26	110.00
IUUC-Ome-081834	Oryza meridionalis	30.57	2.00e-45	175.00
IUUC-Oni-082507	Oryza nivara	29.15	2.00e-39	154.00
IUUC-Opu-083396	Oryza punctata	30.43	9.00e-45	172.00
IUUC-Oru-085220	Oryza rufipogon	29.15	2.00e-39	155.00
IUUC-Osa-085767	Oryza sativa	30.43	9.00e-46	175.00
IUUC-Ola-087420	Oryzias latipes	28.22	1.00e-43	169.00
IUUC-Olu-087740	Ostreococcus lucimarinus	26.42	4.00e-30	124.00
IUUC-Oga-088264	Otolemur garnettii	29.47	4.00e-36	143.00
IUUC-Oar-089335	Ovis aries	28.22	2.00e-37	148.00
IUUC-Ptr-091320	Pan troglodytes	30.19	5.00e-38	150.00
IUUC-Pan-092833	Papio anubis	29.95	1.00e-37	148.00
IUUC-Psi-093504	Pelodiscus sinensis	30.69	1.00e-39	155.00
IUUC-Pma-094189	Petromyzon marinus	28.02	6.00e-37	146.00
IUUC-Pno-094929	Phaeosphaeria nodorum	53.72	5.00e-139	485.00
IUUC-Ppa-095429	Physcomitrella patens	32.92	7.00e-53	199.00
IUUC-Pfo-096337	Poecilia formosa	28.44	3.00e-43	167.00
IUUC-Pab-097571	Pongo abelii	30.43	3.00e-38	150.00
IUUC-Pop-099977	Populus trichocarpa	30.64	7.00e-42	162.00
IUUC-Pca-100394	Procavia capensis	27.06	8.00e-30	122.00
IUUC-Ppe-101848	Prunus persica	31.65	5.00e-46	176.00
IUUC-Pva-102921	Pteropus vampyrus	26.77	4.00e-15	74.30
IUUC-Pgr-103637	Puccinia graminis	28.77	3.00e-48	184.00
IUUC-Ptt-103781	Puccinia triticina	29.33	8.00e-52	196.00
IUUC-Pte-104135	Pyrenophora teres	54.81	4.00e-133	468.00
IUUC-Pyt-104609	Pyrenophora triticirepentis	52.82	2.00e-131	460.00
IUUC-Rno-105114	Rattus norvegicus	28.71	7.00e-38	149.00
IUUC-Sce-106401	Saccharomyces cerevisiae	41.07	3.00e-103	367.00
IUUC-Sha-107122	Sarcophilus harrisii	29.50	6.00e-35	139.00
IUUC-Sja-107766	Schizosaccharomyces japonicus	37.15	7.00e-85	305.00
IUUC-Spo-108134	Schizosaccharomyces pombe	38.57	9.00e-86	308.00
IUUC-Ssl-108398	Sclerotinia sclerotiorum	56.90	1.00e-160	557.00
IUUC-Smo-108720	Selaginella moellendorffii	28.13	3.00e-40	157.00
IUUC-Sit-110354	Setaria italica	29.41	2.00e-45	174.00
IUUC-Sly-111178	Solanum lycopersicum	31.15	5.00e-43	166.00
IUUC-Stu-112778	Solanum tuberosum	30.72	2.00e-42	165.00
IUUC-Sar-113596	Sorex araneus	27.59	2.00e-24	104.00
IUUC-Sbi-114193	Sorghum bicolor	29.69	1.00e-41	162.00
IUUC-Sre-115002	Sporisorium reilianum	37.02	8.00e-31	126.00
IUUC-Ssc-116066	Sus scrofa	28.95	4.00e-37	147.00
IUUC-Tgu-117048	Taeniopygia guttata	30.87	1.00e-39	155.00
IUUC-Tni-119820	Tetraodon nigroviridis	28.22	6.00e-39	153.00
IUUC-Tca-121605	Theobroma cacao	31.78	5.00e-47	179.00
IUUC-Tre-121947	Trichoderma reesei	50.00	4.00e-131	459.00
IUUC-Tvi-122481	Trichoderma virens	50.41	5.00e-133	465.00
IUUC-Tae-123847	Triticum aestivum	30.80	1.00e-46	178.00
IUUC-Tur-126586	Triticum urartu	29.91	9.00e-42	162.00
IUUC-Tme-126900	Tuber melanosporum	47.52	6.00e-111	392.00
IUUC-Ttr-129041	Tursiops truncatus	23.77	1.00e-21	95.90
IUUC-Uma-129628	Ustilago maydis	26.36	4.00e-26	110.00
IUUC-Vpa-130260	Vicugna pacos	28.95	1.00e-38	152.00
IUUC-Vvi-131009	Vitis vinifera	33.57	7.00e-51	192.00
IUUC-Xtr-132083	Xenopus tropicalis	29.37	5.00e-43	166.00
IUUC-Xma-133094	Xiphophorus maculatus	29.41	3.00e-43	167.00
IUUC-Yli-134531	Yarrowia lipolytica	37.13	1.00e-73	268.00
IUUC-Zma-135509	Zea mays	30.97	1.00e-44	172.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence