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Basic Information Integrated Annotations

Tag Content
iUUCD ID IUUC-Ath-007008
Ensembl Protein ID AT5G02430.1
UniProt Accession Q9LZ59; Q9LZ59_ARATH
Genbank Protein ID AED90471.1; CAB85980.1
Protein Name Putative uncharacterized protein T22P11_20; Transducin/WD40 repeat-like superfamily protein
Genbank Nucleotide ID CP002688; AL162971
Gene Name At5g02430; T22P11.20; T22P11_20
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT5G02430 AT5G02430.1 AT5G02430.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
DNA & RNA Element
TRANSFAC
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 7.80e-29 99.4 517 554
UBD/Beta-Prp 5.50e-41 141.5 504 737
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sdtllvsGsdDgtikvWDlrtgvllk 37
    gH d+v +l++ + ll+s+s D+t+++WD+ t+ +lk
   Q: 517 GHLDDVLDLSWsRSQLLLSSSMDKTVRLWDIETQSCLK 554
    8**********8449*******************9986 PP
   


   UBD/Beta-Prp

   S: 36   vwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfsp.sgdklvsGshdrtirvwdletgqcleet 132
    v+++++ k + s+ gh + v ++++s+++ +l+++s D+t+++wd++t +c+ + h+d+v++++f+p + d+++sGs d ir+w+++++q++e
   Q: 504 VFSLSD-KPICSFTGHLDDVLDLSWSRSQ-LLLSSSMDKTVRLWDIETQSCLKLFA-HNDYVTCVQFNPlDEDYFISGSLDAKIRIWNISNRQVVE-- 596
    556666.5568999**************8.***********************999.************777***********************9.. PP
   S: 133 lsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtl.......tgghtdsvyslsfdsng.kelvsgsldgtvklwdlqtgecvrtlnght 222
    + +++v+ v++ pdg+ + Gs ++ +rl++ + kl +t ++++ ++++ +f++ e++ s d+++++ d +e v++++g +
   Q: 597 WNDLKEMVTAVCYTPDGQAAFVGSINGHCRLYSAEDCKLEQTNqidlqnkKKAQAKKITAFQFSPINpSEVLVTSADSRIRVLDG--TELVQKFRGFK 692
    788889****************************999999999999999978899999999999966599*************98..55688888888 PP
   S: 223 dnvksvrfs..pnderlvsgssDgsiriWdlrsgdllktlqlhnssv 267
    + +++ +s + +++v++s+D ++++W ++ ++ ++++++
   Q: 693 NMNSQMTASytVDAKHIVCASEDSQVYVW--KHEEPRLGITGRKTVT 737
    7777777776679****************..7888777777766443 PP
   

Organism Arabidopsis thaliana
Protein Sequence
(Fasta)
MANRGGENGK LDRKKTMTMN WAGLGEFEDD DDHFFDSSNR ISTVVPSDLA SSSDEEEGEF 60
DDCRISFSSN VSSSSRAAPA PDMSPDYDIW MSAPGSITER RRRLLNGMGL ESKKTRLGAI 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Ath-007008|E3,WD_repeat;UBD,Beta-Prp|Arabidopsis thaliana
Please wait for a moment...
Nucleotide Sequence
(Fasta)
AGGGATCCCT TGTTTCTCTC CTTTCCACTA CTCTCCCTCC AAAACAAAAA TCACAACAAC 60
AAGAAAAAAC TTTGAAATCC AAAAAAAAAA AAACCCGAGA AAATTTGAAT TTTATTGGGG 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Ath-007008|E3,WD_repeat;UBD,Beta-Prp|Arabidopsis thaliana
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

KEGG ath:AT5G02430
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aly-006449 Arabidopsis lyrata 95.92 0.00e+00 1477.00
IUUC-Bol-016392 Brassica oleracea 77.29 0.00e+00 1204.00
IUUC-Bra-017757 Brassica rapa 75.61 0.00e+00 1147.00
Created Date 25-Jun-2017

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