iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Pop-099360

Ensembl Protein ID

POPTR_0008s22360.1

UniProt Accession

B9N043; B9N043_POPTR

Genbank Protein ID

ERP57945.1

Protein Name

Transducin family protein

Genbank Nucleotide ID

CM000344

Gene Name

POPTRDRAFT_783045; POPTR_0008s22360g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0008s22360	POPTR_0008s22360.1	POPTR_0008s22360.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.30e-11	44.6	1066	1102

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sdtllvsGsdDgtikvWDlrtgvll 36
           H+  vtc+++   +  l+sGs D+ti+vW + + +++
   Q: 1066 HKKAVTCFSLfeAGESLLSGSSDKTIRVWKMVQRKPE 1102
           8999****95584478**************9877766 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MSKSSVSCFA KSHDHERPDL ESIRGIVDSI NEYMIGFLEN VESWNSLKSQ CTSMLNTIQN 60
QKFFEFSEHS VLSNLYWGIE SIEAAIQAKF PEEKTDHLRN SERLLQVPAL LDEHGVTAGI 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTCTAAGA GTTCTGTTTC TTGTTTTGCT AAATCCCATG ATCATGAGAG ACCAGATCTT 60
GAATCCATAA GGGGAATTGT AGATTCGATC AATGAATACA TGATTGGATT CTTGGAAAAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR016346--Guanine_nucleotide-bd_bsu
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0007165--P:signal transduction

KEGG

pop:POPTR_0008s22360g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000535	Aegilops tauschii	48.41	0.00e+00	791.00
IUUC-Atr-002498	Amborella trichopoda	48.21	0.00e+00	728.00
IUUC-Aly-006263	Arabidopsis lyrata	51.05	1.00e-148	520.00
IUUC-Ath-006648	Arabidopsis thaliana	47.29	0.00e+00	1149.00
IUUC-Bdi-014493	Brachypodium distachyon	49.25	0.00e+00	735.00
IUUC-Bol-016092	Brassica oleracea	49.31	0.00e+00	1094.00
IUUC-Bra-016701	Brassica rapa	48.52	0.00e+00	1096.00
IUUC-Gma-043180	Glycine max	52.67	0.00e+00	1278.00
IUUC-Hvu-047807	Hordeum vulgare	54.00	4.00e-136	477.00
IUUC-Lpe-051180	Leersia perrieri	50.47	0.00e+00	808.00
IUUC-Mtr-057703	Medicago truncatula	54.52	0.00e+00	973.00
IUUC-Mac-064996	Musa acuminata	45.81	0.00e+00	1055.00
IUUC-Oba-075721	Oryza barthii	51.29	0.00e+00	829.00
IUUC-Obr-076233	Oryza brachyantha	50.12	0.00e+00	814.00
IUUC-Ogl-077542	Oryza glaberrima	51.29	0.00e+00	829.00
IUUC-Ogu-078363	Oryza glumaepatula	42.75	0.00e+00	853.00
IUUC-Oin-079050	Oryza indica	51.29	0.00e+00	827.00
IUUC-Olo-080332	Oryza longistaminata	46.95	0.00e+00	702.00
IUUC-Ome-081772	Oryza meridionalis	51.18	0.00e+00	820.00
IUUC-Oni-082467	Oryza nivara	51.29	0.00e+00	828.00
IUUC-Opu-083132	Oryza punctata	51.29	0.00e+00	827.00
IUUC-Oru-084836	Oryza rufipogon	45.08	0.00e+00	832.00
IUUC-Osa-085493	Oryza sativa	51.29	0.00e+00	830.00
IUUC-Ppe-102099	Prunus persica	64.35	0.00e+00	1087.00
IUUC-Sit-110371	Setaria italica	48.98	0.00e+00	814.00
IUUC-Sly-111793	Solanum lycopersicum	49.01	0.00e+00	1180.00
IUUC-Stu-112760	Solanum tuberosum	49.81	0.00e+00	1193.00
IUUC-Sbi-114833	Sorghum bicolor	48.71	0.00e+00	800.00
IUUC-Tca-121753	Theobroma cacao	60.28	0.00e+00	1244.00
IUUC-Tae-124317	Triticum aestivum	48.63	0.00e+00	797.00
IUUC-Tur-126343	Triticum urartu	48.75	0.00e+00	796.00
IUUC-Vvi-130975	Vitis vinifera	58.89	0.00e+00	1135.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence