iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sly-111419

Ensembl Protein ID

Solyc01g096200.2.1

UniProt Accession

K4B008; K4B008_SOLLC

Protein Name

RING-type E3 ubiquitin transferase

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Solyc01g096200.2	Solyc01g096200.2.1	Solyc01g096200.2.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	1.10e-24	87.1	259	325

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 5    eflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceen 72
            f CpI++e+M+dPv +psG+t++r +Iekwla+g+  cP+t++pl+++++ Pn+tlr+ i++w ++n
   Q: 259  SFYCPITGEVMTDPVETPSGHTFERCAIEKWLAEGNL-CPMTSTPLKNTMMRPNKTLRQSIEEWKDRN 325
           699*********************************9.**************************9988 PP

Organism

Solanum lycopersicum

Protein Sequence
(Fasta)

MPDVIGGPFA DVLSATLESI LEIVLTSKNV FIEKKSFAEL SDYLNRIVPF LKEINRKNIT 60
DSTPWQNVIQ ILNQQTVDAR QLILECSKKN KVYLLMNCRH IAKRIENITR EISRALSCIP 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AATCATTACT TGCTAGATTG AATCACATGG GATGAGATAG CCTCAACTCT GGTCCTTGAG 60
AGTTTTTCGG GGCTGAAAAC ATGATGCCCG ATGTAATTGG TGGTCCTTTT GCAGATGTCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0808--Transferase

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000225--Armadillo
IPR002885--Pentatricopeptide_repeat
IPR008808--Powdery_mildew-R_dom
IPR011990--TPR-like_helical_dom
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51375--PPR
PS51698--U_BOX

Pfam

PF01535--PPR
PF13041--PPR_2
PF05659--RPW8
PF04564--U-box

SMART

SM00185--ARM
SM00504--Ubox

Gene Ontology

GO:0004842--F:ubiquitin-protein transferase activity

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002671	Amborella trichopoda	51.06	0.00e+00	925.00
IUUC-Bol-016246	Brassica oleracea	31.73	3.00e-59	223.00
IUUC-Gma-042663	Glycine max	55.92	0.00e+00	1022.00
IUUC-Mtr-057765	Medicago truncatula	55.79	0.00e+00	1045.00
IUUC-Mac-064496	Musa acuminata	48.57	0.00e+00	768.00
IUUC-Ome-081873	Oryza meridionalis	44.84	4.00e-84	305.00
IUUC-Ppa-095511	Physcomitrella patens	39.68	0.00e+00	670.00
IUUC-Pop-099169	Populus trichocarpa	61.41	0.00e+00	1052.00
IUUC-Ppe-101683	Prunus persica	60.62	0.00e+00	1081.00
IUUC-Smo-109439	Selaginella moellendorffii	40.30	0.00e+00	670.00
IUUC-Stu-112717	Solanum tuberosum	94.78	0.00e+00	1815.00
IUUC-Tca-121719	Theobroma cacao	60.06	0.00e+00	1102.00
IUUC-Tur-126385	Triticum urartu	31.87	3.00e-62	232.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence