iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Aly-005827

Ensembl Protein ID

fgenesh1_pg.C_scaffold_3001212

UniProt Accession

D7L1C8; D7L1C8_ARALL

Genbank Protein ID

EFH59074.1

Protein Name

Putative uncharacterized protein

Genbank Nucleotide ID

GL348715

Gene Name

VCS; ARALYDRAFT_341449

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
fgenesh1_pg.C_scaffold_3001212	fgenesh1_pg.C_scaffold_3001212	fgenesh1_pg.C_scaffold_3001212

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.70e-11	43.5	234	268

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sd.tllvsGsdDgtikvWDlrt 32
           gH+ +vt++af   d ++l+s s Dg++ vW +++
   Q: 234  GHSQRVTDMAFfaEDvDMLASVSLDGKVFVWKISE 268
           8*********999888***************9765 PP

Organism

Arabidopsis lyrata

Protein Sequence
(Fasta)

MASSPGNTNP HNPPPFDLGI LFKPPSNPYP PPPASYPPPT GPFLHNQYDQ QHYAPPGISA 60
QPSPVTQQQQ DVSSSSAATN LHPQRTLSYP TPPLNLQSPR SNHNPGTHIL ALLNNNNGVP 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCGTCTT CTCCTGGTAA TACTAACCCT CATAATCCTC CTCCGTTTGA TCTCGGTATT 60
CTCTTCAAAC CTCCATCGAA TCCTTATCCG CCGCCGCCGG CATCTTATCC TCCGCCTACA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR032401--EDC4_WD40
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF16529--Ge1_WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005829--C:cytosol
GO:0005634--C:nucleus
GO:0000932--C:P-body
GO:0003729--F:mRNA binding
GO:0071365--P:cellular response to auxin stimulus
GO:0031087--P:deadenylation-independent decapping of nuclear-transcribed mRNA
GO:0009965--P:leaf morphogenesis
GO:0010072--P:primary shoot apical meristem specification
GO:0010071--P:root meristem specification

KEGG

aly:ARALYDRAFT_341449

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000781	Aegilops tauschii	48.92	0.00e+00	1060.00
IUUC-Atr-002815	Amborella trichopoda	60.47	0.00e+00	645.00
IUUC-Ath-006603	Arabidopsis thaliana	95.29	0.00e+00	2394.00
IUUC-Bdi-014578	Brachypodium distachyon	48.26	0.00e+00	1046.00
IUUC-Bol-015150	Brassica oleracea	79.26	0.00e+00	1811.00
IUUC-Bra-017673	Brassica rapa	80.32	0.00e+00	1841.00
IUUC-Gma-044374	Glycine max	58.70	0.00e+00	1275.00
IUUC-Hvu-047830	Hordeum vulgare	47.96	0.00e+00	1043.00
IUUC-Lpe-051585	Leersia perrieri	48.94	0.00e+00	994.00
IUUC-Loc-051778	Lepisosteus oculatus	26.54	1.00e-27	118.00
IUUC-Mtr-057751	Medicago truncatula	59.51	0.00e+00	1239.00
IUUC-Oba-075696	Oryza barthii	44.34	0.00e+00	661.00
IUUC-Ogl-077350	Oryza glaberrima	49.43	0.00e+00	1004.00
IUUC-Oin-079418	Oryza indica	48.71	0.00e+00	964.00
IUUC-Olo-080844	Oryza longistaminata	46.64	0.00e+00	899.00
IUUC-Oni-082323	Oryza nivara	48.86	0.00e+00	982.00
IUUC-Opu-084175	Oryza punctata	48.58	0.00e+00	994.00
IUUC-Oru-084677	Oryza rufipogon	49.14	0.00e+00	985.00
IUUC-Osa-085798	Oryza sativa	49.43	0.00e+00	1002.00
IUUC-Ppa-095912	Physcomitrella patens	52.94	2.00e-124	440.00
IUUC-Pop-100059	Populus trichocarpa	56.22	0.00e+00	1233.00
IUUC-Pca-100720	Procavia capensis	26.84	3.00e-06	46.60
IUUC-Ppe-101310	Prunus persica	59.44	0.00e+00	1180.00
IUUC-Sit-110590	Setaria italica	48.95	0.00e+00	1064.00
IUUC-Sly-111460	Solanum lycopersicum	56.45	0.00e+00	1233.00
IUUC-Sbi-114653	Sorghum bicolor	50.45	0.00e+00	1053.00
IUUC-Tca-121694	Theobroma cacao	58.77	0.00e+00	1375.00
IUUC-Tae-125636	Triticum aestivum	48.31	0.00e+00	1077.00
IUUC-Tur-126244	Triticum urartu	45.53	0.00e+00	966.00
IUUC-Vvi-130965	Vitis vinifera	60.95	0.00e+00	1353.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence