iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-006955

UUCD1 version

UUC-ArT-01520

Ensembl Protein ID

AT2G04240.2

UniProt Accession

Q9SI09; XERIC_ARATH

Genbank Protein ID

AAD27914.1; AEC05811.1; AEC05812.1; AAG40042.1; AAG41449.1; AAK00371.1

Protein Name

Probable E3 ubiquitin-protein ligase XERICO; RING-type E3 ubiquitin transferase XERICO

Genbank Nucleotide ID

AC007213; CP002685; CP002685; AF324691; AF326867; AF339689

Gene Name

XERICO; At2g04240; T23O15.13

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT2G04240	AT2G04240.2	AT2G04240.2

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
Protein-protein Interaction
PINA	HINT	Mentha
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	3.70e-08	34.7	103	145

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf..kdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           C++Cl+ f  + +   l CgH+fh++Cl+kw       + +++CPlCr
   Q: 103  CSVCLSKFqgDSEINKLKCGHLFHKTCLEKW-----IDYWNITCPLCR 145
           ********8744477899*************.....6999*******8 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Function on abscisic acid homeostasis at post-translational level, probably through ubiquitin/proteasome-dependent substrate-specific degradation.

Protein Sequence
(Fasta)

MGLSSLPGPS EGMLCVILVN TALSISIVKG IVRSFLGIVG ISLSPSSSSP SSVTVSSENS 60
STSESFDFRV CQPESYLEEF RNRTPTLRFE SLCRCKKQAD NECSVCLSKF QGDSEINKLK 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATCAAAACCA ACTCTCTCTA CACACTTTTT CAGATTCCAT CATCACTTGT TCTTTTCACA 60
CCCAATAAAA ACTTGCATCT TTCTTCTAAA TTGTTGATGA TCGCTTCTCA TATTTGACCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0937--Abscisic acid biosynthesis
KW-0181--Complete proteome
KW-0472--Membrane
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0808--Transferase
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0009688--P:abscisic acid biosynthetic process
GO:0009687--P:abscisic acid metabolic process
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0010200--P:response to chitin
GO:0009739--P:response to gibberellin
GO:0006970--P:response to osmotic stress
GO:0009651--P:response to salt stress

KEGG

ath:AT2G04240

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002705	Amborella trichopoda	42.76	1.00e-28	118.00
IUUC-Aly-005890	Arabidopsis lyrata	83.33	2.00e-68	249.00
IUUC-Bdi-014109	Brachypodium distachyon	31.88	2.00e-15	74.30
IUUC-Bol-015727	Brassica oleracea	79.14	5.00e-66	242.00
IUUC-Bra-017460	Brassica rapa	74.07	6.00e-60	221.00
IUUC-Gma-043655	Glycine max	66.23	8.00e-48	181.00
IUUC-Hvu-047116	Hordeum vulgare	55.56	2.00e-14	70.90
IUUC-Lpe-051313	Leersia perrieri	33.33	4.00e-19	86.30
IUUC-Mtr-058124	Medicago truncatula	56.13	1.00e-42	164.00
IUUC-Mac-064673	Musa acuminata	42.07	7.00e-24	102.00
IUUC-Oba-075151	Oryza barthii	55.56	9.00e-13	65.50
IUUC-Ogl-077775	Oryza glaberrima	58.33	1.00e-14	72.00
IUUC-Ogu-078543	Oryza glumaepatula	55.00	2.00e-11	61.20
IUUC-Oin-079546	Oryza indica	58.33	1.00e-14	72.00
IUUC-Ome-081545	Oryza meridionalis	61.36	6.00e-15	72.80
IUUC-Oni-082196	Oryza nivara	58.33	1.00e-14	72.00
IUUC-Opu-083519	Oryza punctata	54.72	4.00e-15	73.60
IUUC-Oru-084312	Oryza rufipogon	58.33	1.00e-14	71.60
IUUC-Osa-086234	Oryza sativa	58.33	1.00e-14	72.00
IUUC-Pop-099448	Populus trichocarpa	64.29	2.00e-47	180.00
IUUC-Ppe-101936	Prunus persica	62.09	1.00e-42	164.00
IUUC-Sit-110545	Setaria italica	50.00	5.00e-12	63.90
IUUC-Sly-111064	Solanum lycopersicum	45.38	2.00e-26	109.00
IUUC-Stu-112754	Solanum tuberosum	48.41	2.00e-36	144.00
IUUC-Sbi-113942	Sorghum bicolor	31.45	2.00e-19	87.80
IUUC-Tca-121106	Theobroma cacao	62.34	4.00e-46	176.00
IUUC-Tae-125056	Triticum aestivum	56.25	1.00e-14	71.60
IUUC-Vvi-131394	Vitis vinifera	59.74	1.00e-43	168.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence