iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Bra-017068

Ensembl Protein ID

Bra009683.1-P

UniProt Accession

M4CZN6; M4CZN6_BRARP

Protein Name

Katanin p80 WD40 repeat-containing subunit B1 homolog

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Bra009683	Bra009683.1	Bra009683.1-P

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	9.60e-36	121.3	156	193
UBD/Beta-Prp	6.90e-56	190.6	29	267

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvll 36
           gHt +v+ l+f +d + +vsG+ D+ +kvWDl+ g+ll
   Q: 156  GHTRGVNVLRFtPDgRWVVSGGEDNIVKVWDLTAGKLL 193
           8***********99999****************99876 PP

UBD/Beta-Prp

   S: 8    hhksvitcvkf.spdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsf 102
           +h++ ++c+k+  +++++l+tg++d+++ +w + +++++ sl+gh++++ +v+f+ ++ + + g+  +tik+wdl+  k v+tl+gh ++  s++f
   Q: 29   AHSAAVNCLKIgRKSSRVLVTGGEDHKVNLWAIGKPNAILSLYGHSSGIDSVTFDASEVLVAAGAASGTIKLWDLEEAKLVRTLTGHRSNCISVDF 124
           789999*****999********************************************999999999***************************** PP
   S: 103  spsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsg 198
           +p g++++sGs d  +++wdl+++  ++ t +gh++ vn++++ pdg+ +vsG+ D++v++Wdl  gkll++++  h+++++sl+f++  + l++g
   Q: 125  HPFGEFFASGSLDTNLKIWDLRKKGPIH-TYKGHTRGVNVLRFTPDGRWVVSGGEDNIVKVWDLTAGKLLTEFKC-HEGQIQSLDFHPHEFLLATG 218
           ****************************.********************************************98.******************** PP
   S: 199  sldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiri 248
           s d+tvk+wdl+t e + +    t+ v+++ f p+++ +++g   +s++i
   Q: 219  SADRTVKFWDLETFELIGSGGPETSGVRCLSFNPDGKTVLCGL-QESLKI 267
           *************************************999996.444554 PP

Organism

Brassica rapa

Functional Description
(View)

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.

Protein Sequence
(Fasta)

MSPTTLQGLH DFYQASLQAT YPFLSEFVAH SAAVNCLKIG RKSSRVLVTG GEDHKVNLWA 60
IGKPNAILSL YGHSSGIDSV TFDASEVLVA AGAASGTIKL WDLEEAKLVR TLTGHRSNCI 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTCCCCTA CTACATTGCA AGGGCTCCAT GACTTCTACC AAGCGAGCCT ACAAGCTACG 60
TATCCTTTTC TCTCGGTATT CTCTTTTAGG GTTTGCTCTA AGAGTCTCTT GATTAGCTTA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0493--Microtubule
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF13925--Katanin_con80
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0051013--P:microtubule severing

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000954	Aegilops tauschii	54.28	3.00e-150	526.00
IUUC-Aly-005711	Arabidopsis lyrata	87.97	0.00e+00	1337.00
IUUC-Ath-007606	Arabidopsis thaliana	87.85	0.00e+00	1362.00
IUUC-Bgr-012225	Blumeria graminis	31.55	1.00e-27	117.00
IUUC-Bol-016374	Brassica oleracea	95.94	0.00e+00	1504.00
IUUC-Cre-022746	Chlamydomonas reinhardtii	42.76	4.00e-78	285.00
IUUC-Mpo-057381	Magnaporthe poae	34.38	3.00e-26	113.00
IUUC-Mac-065100	Musa acuminata	51.87	0.00e+00	766.00
IUUC-Oin-079811	Oryza indica	63.24	2.00e-178	619.00
IUUC-Olo-080245	Oryza longistaminata	63.24	1.00e-178	619.00
IUUC-Ome-081239	Oryza meridionalis	78.55	4.00e-168	585.00
IUUC-Ppa-095379	Physcomitrella patens	78.62	4.00e-148	518.00
IUUC-Smo-109409	Selaginella moellendorffii	62.68	2.00e-155	542.00
IUUC-Sit-110360	Setaria italica	62.48	8.00e-180	624.00
IUUC-Stu-112053	Solanum tuberosum	52.98	0.00e+00	806.00
IUUC-Ssc-115949	Sus scrofa	44.89	1.00e-47	183.00
IUUC-Tca-121185	Theobroma cacao	60.21	0.00e+00	973.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence