iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-007578

UUCD1 version

UUC-ArT-00541

Ensembl Protein ID

AT4G24015.1

UniProt Accession

Q84TF5; Q9ZT45; RHA4A_ARATH

Genbank Protein ID

AAC69852.1; AEE84840.1; AAO64779.1

Protein Name

Probable E3 ubiquitin-protein ligase RHA4A; RING-H2 finger A4a; RING-H2 zinc finger protein RHA4a; RING-type E3 ubiquitin transferase RHA4A

Genbank Nucleotide ID

AF079178; AL078468; BT005844

Gene Name

RHA4A; At4g24015; T32A16.6

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT4G24015	AT4G24015.1	AT4G24015.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	3.00e-07	31.7	105	147

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf..kdgplvlp.CgHvfhadClqkwpglknssskefrCPlCr 46
           C++Cl +f  k++++ +p C+H+fh+dC++ w       + + +CPlCr
   Q: 105  CCVCLGEFelKEELVEMPlCKHIFHLDCIHLW------LYSHNTCPLCR 147
           ******9999777999999*************......**********8 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Probable E3 ubiquitin-protein ligase that may possess E3 ubiquitin ligase activity in vitro.

Protein Sequence
(Fasta)

MVDPQSPITP HLYPQAIQLK LYQAFIFSIP ILFSIILFLL FYLFYLKRRA SSLSSPSPMI 60
LPVSSSHQTS SHLPSVCLLD VKVELKDKLH VVLFNEELGT RDSLCCVCLG EFELKEELVE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TCAGTTCTCA TTTGGGTGTT TCCTTTAATT TCAATTTTTT TTGTTGGGAT TGATTTTTAA 60
AGTTATGGTT GATCCTCAAT CACCAATCAC ACCACACCTA TACCCACAAG CAATTCAACT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0808--Transferase
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016740--F:transferase activity
GO:0008270--F:zinc ion binding

KEGG

ath:AT4G24015

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-006218	Arabidopsis lyrata	99.43	6.00e-47	179.00
IUUC-Bol-015082	Brassica oleracea	92.53	6.00e-54	202.00
IUUC-Bra-018105	Brassica rapa	90.23	2.00e-59	220.00
IUUC-Gma-042696	Glycine max	67.79	9.00e-36	142.00
IUUC-Mtr-058468	Medicago truncatula	61.44	4.00e-32	130.00
IUUC-Pop-098932	Populus trichocarpa	67.35	2.00e-36	145.00
IUUC-Ppe-101687	Prunus persica	62.91	2.00e-34	138.00
IUUC-Sly-110876	Solanum lycopersicum	62.91	5.00e-31	127.00
IUUC-Stu-112209	Solanum tuberosum	61.78	3.00e-31	127.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence