iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Details
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Osa-085991

UUCD1 version

UUC-OrS-01054

Ensembl Protein ID

OS06T0102700-01

UniProt Accession

Q5VRH9; Q5VRH8; PUB12_ORYSJ

Genbank Protein ID

BAD67946.1; BAD67947.1; BAF18449.2; BAS95707.1; BAG90500.1

Protein Name

U-box domain-containing protein 12; Plant U-box protein 12; RING-type E3 ubiquitin transferase PUB12

Genbank Nucleotide ID

AP002842; AP002842; AP008212; AP014962; AK067611; AK071080

Gene Name

PUB12; Os06g0102700; LOC_Os06g01304; OSJNBa0075G19.19-1

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
OS06G0102700	OS06T0102700-01	OS06T0102700-01

Status

Reviewed

Details

Family	Domain	References (PMIDs)
E3 activity/RING/U-box	U-box	19825583

Classification

Family	E-value	Score	Start	End
E3 activity/RING/U-box	1.60e-36	125.1	228	300
E3 activity/RING/RING	0.00055	21.3	234	270

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceenss 74
           +p+ef+CpIslelM+dPv+++sG+ty+rs+I+kwl+sg+ktcP+t+qpl++++l+Pn +l++li++wce+n++
   Q: 228  IPDEFRCPISLELMQDPVIVSSGQTYERSCIQKWLDSGHKTCPKTQQPLSHTSLTPNFVLKSLISQWCEANGI 300
           79********************************************************************986 PP

E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlpCgHvfhadClqkwpglknssskefrCP 43
           C+i le ++d p++++ g ++ ++C+qkw     + s++ +CP
   Q: 234  CPISLELMQD-PVIVSSGQTYERSCIQKW-----LDSGHKTCP 270
           **********.999***************.....899999999 PP

Organism

Oryza sativa

Functional Description
(View)

Possesses E3 ubiquitin-protein ligase in vitro.

Protein Sequence
(Fasta)

MPKRVADEIA ALPEPRGPLR RPCADLSRRV RLLAPLLDHL PASSSSSSST PLADALGAAR 60
DLLRKTRDGS KIDQAMRGDA FLDEFAGVNR QIHLALDALP YNTFHMPQEV QEQVALVHSQ 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GGCTTGGCTT GCTGTCCGCC CGCGTTCACA AGGAGAGGAG AGGAGGTTGA GGTTGATCTT 60
GAGTGTGAGG AGAGGCGAGA TCGGAAAAAG GGGAAATCGG CGTTGCGATG CCGAAGCGGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0025--Alternative splicing
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0808--Transferase
KW-0833--Ubl conjugation pathway

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000225--Armadillo
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50176--ARM_REPEAT
PS51698--U_BOX

Pfam

PF00514--Arm
PF04564--U-box

SMART

SM00185--ARM
SM00504--Ubox

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0004842--F:ubiquitin-protein transferase activity
GO:0016567--P:protein ubiquitination

KEGG

osa:4339839

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002932	Amborella trichopoda	58.64	0.00e+00	684.00
IUUC-Aly-006103	Arabidopsis lyrata	58.46	0.00e+00	638.00
IUUC-Ath-006994	Arabidopsis thaliana	57.95	0.00e+00	637.00
IUUC-Bdi-014691	Brachypodium distachyon	86.96	0.00e+00	951.00
IUUC-Bol-016160	Brassica oleracea	56.79	0.00e+00	637.00
IUUC-Bra-016727	Brassica rapa	56.62	0.00e+00	635.00
IUUC-Cel-018336	Caenorhabditis elegans	31.11	4.00e-09	56.60
IUUC-Gma-043634	Glycine max	59.30	0.00e+00	711.00
IUUC-Hvu-047272	Hordeum vulgare	83.24	0.00e+00	898.00
IUUC-Itr-048039	Ictidomys tridecemlineatus	30.98	3.00e-09	57.00
IUUC-Lpe-051517	Leersia perrieri	93.21	0.00e+00	1033.00
IUUC-Mtr-057651	Medicago truncatula	59.31	0.00e+00	669.00
IUUC-Mac-064891	Musa acuminata	55.17	3.00e-175	607.00
IUUC-Oba-075750	Oryza barthii	99.50	0.00e+00	1149.00
IUUC-Obr-076793	Oryza brachyantha	94.71	0.00e+00	999.00
IUUC-Ogl-077380	Oryza glaberrima	99.67	0.00e+00	1150.00
IUUC-Ogu-078219	Oryza glumaepatula	98.51	0.00e+00	1142.00
IUUC-Oin-079724	Oryza indica	99.17	0.00e+00	1182.00
IUUC-Olo-080320	Oryza longistaminata	86.09	0.00e+00	984.00
IUUC-Ome-081932	Oryza meridionalis	98.51	0.00e+00	1142.00
IUUC-Oni-082439	Oryza nivara	99.50	0.00e+00	1148.00
IUUC-Opu-083837	Oryza punctata	97.68	0.00e+00	1166.00
IUUC-Oru-085172	Oryza rufipogon	99.50	0.00e+00	1152.00
IUUC-Pop-099229	Populus trichocarpa	59.30	0.00e+00	693.00
IUUC-Ppe-101965	Prunus persica	55.22	0.00e+00	650.00
IUUC-Sit-110461	Setaria italica	86.99	0.00e+00	874.00
IUUC-Sly-111662	Solanum lycopersicum	59.93	0.00e+00	693.00
IUUC-Stu-111979	Solanum tuberosum	60.43	0.00e+00	696.00
IUUC-Sbi-114550	Sorghum bicolor	82.12	0.00e+00	969.00
IUUC-Ssc-116061	Sus scrofa	31.52	9.00e-12	65.50
IUUC-Tca-121269	Theobroma cacao	59.97	0.00e+00	691.00
IUUC-Tae-124061	Triticum aestivum	82.21	0.00e+00	939.00
IUUC-Tur-126276	Triticum urartu	81.77	0.00e+00	870.00
IUUC-Tbe-127613	Tupaia belangeri	32.64	6.00e-09	55.80
IUUC-Ttr-128612	Tursiops truncatus	26.98	8.00e-12	65.90
IUUC-Vvi-131729	Vitis vinifera	62.19	0.00e+00	709.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence