iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Gma-043722

Ensembl Protein ID

GLYMA03G31220.1

UniProt Accession

I1JNW2; I1JNW2_SOYBN

Genbank Protein ID

KRH67236.1

Protein Name

tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; WD repeat-containing protein 4 homolog

Genbank Nucleotide ID

CM000836

Gene Name

LOC100809122; GLYMA_03G155900

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
GLYMA03G31220	GLYMA03G31220.1	GLYMA03G31220.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	5.80e-18	65.9	192	233

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf......sdtllvsGsdDgtikvWDlrtgvll 36
           gHt+ v+claf      + ++l+sGs+D t+++W++++g ll
   Q: 192  GHTEFVSCLAFiqaqecPQGFLLSGSGDSTVRLWNIDSGALL 233
           8*************997669***************9999776 PP

Organism

Glycine max

Functional Description
(View)

Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit.

Protein Sequence
(Fasta)

MESESKNDTQ VAPALIAVHP DQSSVAVAVG PHLRVFDLLS GSAASLTDDS DGAVPFHKDN 60
IRAIRFGAKG KLFVSAGDDK TLKVWSTQSW RCITTVSSEK RVTAVAISDD GTFVCFADKF 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GAGAAACCAG ATAGAAAGAA AGCCCAATAT TTGGAACGGA GAAGCGCCAA ACCCTAAGAC 60
GGAGGTTAGC TTTTCTGAGT CGCAGCATCA GCAGTAGCAT GGAATCCGAA TCCAAGAACG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0819--tRNA processing
KW-0853--WD repeat

Interpro

IPR027295--Quinoprotein_ADH-like_fam
IPR028884--Trm82
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005829--C:cytosol
GO:0005634--C:nucleus
GO:0043527--C:tRNA methyltransferase complex
GO:0036265--P:RNA (guanine-N7)-methylation
GO:0030488--P:tRNA methylation

KEGG

gmx:100809122

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000556	Aegilops tauschii	50.12	1.00e-94	339.00
IUUC-Atr-002431	Amborella trichopoda	57.60	4.00e-36	143.00
IUUC-Apl-003975	Anas platyrhynchos	31.52	4.00e-26	112.00
IUUC-Aca-005170	Anolis carolinensis	36.05	2.00e-17	83.20
IUUC-Aly-005769	Arabidopsis lyrata	61.10	6.00e-141	493.00
IUUC-Ath-006733	Arabidopsis thaliana	60.34	1.00e-135	476.00
IUUC-Ame-010613	Astyanax mexicanus	32.71	4.00e-23	102.00
IUUC-Bta-012788	Bos taurus	32.87	6.00e-22	98.60
IUUC-Bdi-014458	Brachypodium distachyon	52.27	1.00e-100	360.00
IUUC-Bol-016398	Brassica oleracea	61.58	1.00e-131	462.00
IUUC-Bra-016644	Brassica rapa	61.37	3.00e-135	476.00
IUUC-Cpo-021963	Cavia porcellus	37.57	4.00e-22	99.00
IUUC-Cne-026834	Cryptococcus neoformans	30.08	5.00e-20	92.40
IUUC-Dre-028427	Danio rerio	34.55	2.00e-26	113.00
IUUC-Dme-032136	Drosophila melanogaster	39.25	3.00e-14	72.80
IUUC-Fca-035833	Felis catus	35.00	4.00e-20	92.40
IUUC-Fal-037497	Ficedula albicollis	34.60	2.00e-26	113.00
IUUC-Gga-040547	Gallus gallus	31.80	2.00e-24	106.00
IUUC-Gac-041761	Gasterosteus aculeatus	33.50	3.00e-22	99.40
IUUC-Hvu-047643	Hordeum vulgare	51.55	2.00e-107	382.00
IUUC-Itr-048103	Ictidomys tridecemlineatus	31.54	5.00e-22	98.60
IUUC-Kpa-049283	Komagataella pastoris	33.33	4.00e-17	82.40
IUUC-Lch-050682	Latimeria chalumnae	34.18	2.00e-25	110.00
IUUC-Lpe-050712	Leersia perrieri	50.00	6.00e-109	387.00
IUUC-Loc-052599	Lepisosteus oculatus	32.98	4.00e-30	125.00
IUUC-Laf-054390	Loxodonta africana	31.95	1.00e-23	103.00
IUUC-Mtr-058600	Medicago truncatula	81.06	0.00e+00	660.00
IUUC-Mla-059135	Melampsora laricipopulina	30.04	5.00e-20	92.40
IUUC-Mga-059876	Meleagris gallopavo	30.59	4.00e-26	112.00
IUUC-Mvi-060359	Microbotryum violaceum	31.01	1.00e-11	65.10
IUUC-Mmr-061518	Microcebus murinus	33.33	2.00e-21	96.30
IUUC-Mac-065417	Musa acuminata	54.68	1.00e-111	396.00
IUUC-Ont-071555	Oreochromis niloticus	35.56	3.00e-22	99.80
IUUC-Oan-072951	Ornithorhynchus anatinus	31.56	2.00e-24	106.00
IUUC-Ocu-074679	Oryctolagus cuniculus	33.90	2.00e-17	83.60
IUUC-Oba-075355	Oryza barthii	48.35	3.00e-100	358.00
IUUC-Obr-076769	Oryza brachyantha	52.19	5.00e-118	417.00
IUUC-Ogl-077168	Oryza glaberrima	52.97	4.00e-117	414.00
IUUC-Ogu-078275	Oryza glumaepatula	48.23	4.00e-99	355.00
IUUC-Oin-079207	Oryza indica	52.97	4.00e-117	414.00
IUUC-Ome-081169	Oryza meridionalis	61.38	3.00e-44	172.00
IUUC-Oni-082437	Oryza nivara	48.48	9.00e-102	363.00
IUUC-Opu-084031	Oryza punctata	53.21	3.00e-116	412.00
IUUC-Oru-084380	Oryza rufipogon	48.58	4.00e-101	361.00
IUUC-Osa-085327	Oryza sativa	53.21	7.00e-118	417.00
IUUC-Ola-086716	Oryzias latipes	34.29	9.00e-24	104.00
IUUC-Olu-087708	Ostreococcus lucimarinus	29.43	2.00e-34	140.00
IUUC-Oar-090239	Ovis aries	36.52	3.00e-21	96.30
IUUC-Psi-093792	Pelodiscus sinensis	27.70	6.00e-23	101.00
IUUC-Ppa-095757	Physcomitrella patens	40.86	1.00e-74	273.00
IUUC-Pfo-096465	Poecilia formosa	30.88	1.00e-21	97.40
IUUC-Pop-098979	Populus trichocarpa	62.04	4.00e-138	484.00
IUUC-Ppe-101515	Prunus persica	68.07	5.00e-156	543.00
IUUC-Smo-108938	Selaginella moellendorffii	40.64	8.00e-69	254.00
IUUC-Sit-110020	Setaria italica	51.20	2.00e-110	392.00
IUUC-Sly-111543	Solanum lycopersicum	60.85	4.00e-146	511.00
IUUC-Stu-111925	Solanum tuberosum	60.14	4.00e-145	507.00
IUUC-Sbi-114061	Sorghum bicolor	50.69	4.00e-111	394.00
IUUC-Tgu-117321	Taeniopygia guttata	31.46	1.00e-21	97.10
IUUC-Tru-118454	Takifugu rubripes	32.73	3.00e-25	109.00
IUUC-Tni-119894	Tetraodon nigroviridis	33.47	2.00e-23	103.00
IUUC-Tca-121746	Theobroma cacao	64.81	3.00e-146	511.00
IUUC-Tae-124114	Triticum aestivum	52.53	2.00e-108	385.00
IUUC-Tur-126254	Triticum urartu	47.83	1.00e-84	306.00
IUUC-Ttr-129056	Tursiops truncatus	34.62	7.00e-23	101.00
IUUC-Vvi-131428	Vitis vinifera	65.57	3.00e-162	564.00
IUUC-Xma-133605	Xiphophorus maculatus	31.32	6.00e-22	98.60

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence