iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sly-111336

Ensembl Protein ID

Solyc04g078320.2.1

UniProt Accession

K4BUR9; K4BUR9_SOLLC

Protein Name

Uncharacterized protein

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Solyc04g078320.2	Solyc04g078320.2.1	Solyc04g078320.2.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	7.90e-53	174.8	425	463
UBD/Beta-Prp	2.20e-68	231.4	395	591

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gH+++v+++++ ++  ll+s+sdD t k+W+++++++l+
   Q: 425  GHQSEVNAIKWdPSgSLLASCSDDTTAKIWSVKQDTCLH 463
           8***********6669********************997 PP

UBD/Beta-Prp

   S: 20   pdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfsp...... 104
           ++++ +at s+d++i v +v +   l+ +sgh++ev+a+k++p+g++l+++s+D t+k+w++++ +c+h +++h ++++++++sp      
   Q: 395  RNNNSFATCSTDNMIYVCKVGESRPLKAFSGHQSEVNAIKWDPSGSLLASCSDDTTAKIWSVKQDTCLHDFREHAKEIYTIRWSPcgpgts 485
           5677799999999999999999999999999999999999999999999999999999999999999999999999999999998888887 PP
   S: 105  ..sg.dklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsng 192
             ++   l+s+s d+t+++wd+e g  ++  l+gh++ v +v+++p++ +l++GslDr++++W++k +k+++t +g  ++ +  + ++++g
   Q: 486  npNQqLLLASASFDSTVKLWDVEIGRLVH-SLNGHRDPVYSVAFSPNSEYLATGSLDRCLNIWSVKDAKIIKTYSG--NGGIFEVCWNKEG 573
           77443678999999999999999999999.9999999999999999999999999999999999999999999988..8999999999999 PP
   S: 193  kelvsgsldgtvklwdlq 210
             ++++  d+ v ++d++
   Q: 574  SKVAACFADNVVCVFDVR 591
           999999999999999986 PP

Organism

Solanum lycopersicum

Protein Sequence
(Fasta)

MISLTSSELN YLVFRYLQES GFTHSAFALG YEAGINKSPI DGNLVPPGGL VTFVQKGIQY 60
LELEANLTND DTDMDEDFQF IQPIDLITKD VYELHKIIKE KKEKLRKDKP RGKDKDINER 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CGATGAAGAT GACGTAATGC TACGGAAAAT CACATCTATT TGTAACGTCT CCTTCATACA 60
TATCTCTTTC TGTTTCACCC TCTCTAAAAT CTCGGAGAGA GAAAGCACAT GGTGTTTGTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR006594--LisH
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50896--LISH
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08513--LisH
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00667--LisH
SM00320--WD40

Gene Ontology

GO:0000118--C:histone deacetylase complex
GO:0003714--F:transcription corepressor activity
GO:0016575--P:histone deacetylation
GO:0006357--P:regulation of transcription from RNA polymerase II promoter

KEGG

sly:101267804

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000916	Aegilops tauschii	73.94	6.00e-65	238.00
IUUC-Atr-002514	Amborella trichopoda	79.73	0.00e+00	634.00
IUUC-Aly-005622	Arabidopsis lyrata	70.22	5.00e-164	570.00
IUUC-Ath-007137	Arabidopsis thaliana	69.73	2.00e-161	561.00
IUUC-Bdi-014315	Brachypodium distachyon	77.12	1.00e-176	612.00
IUUC-Bol-016277	Brassica oleracea	68.88	3.00e-165	574.00
IUUC-Bra-016944	Brassica rapa	69.13	5.00e-166	577.00
IUUC-Cpo-021682	Cavia porcellus	58.50	9.00e-138	482.00
IUUC-Cre-022979	Chlamydomonas reinhardtii	61.92	9.00e-129	452.00
IUUC-Dor-030732	Dipodomys ordii	60.34	2.00e-125	441.00
IUUC-Ete-033150	Echinops telfairi	60.06	8.00e-114	403.00
IUUC-Gma-043369	Glycine max	77.12	0.00e+00	645.00
IUUC-Itr-047958	Ictidomys tridecemlineatus	60.44	2.00e-128	451.00
IUUC-Lpe-051084	Leersia perrieri	77.89	4.00e-180	623.00
IUUC-Meu-056563	Macropus eugenii	66.24	1.00e-92	332.00
IUUC-Mtr-058624	Medicago truncatula	65.03	0.00e+00	744.00
IUUC-Mlu-067852	Myotis lucifugus	58.00	1.00e-136	479.00
IUUC-Oba-075618	Oryza barthii	62.33	0.00e+00	687.00
IUUC-Obr-076718	Oryza brachyantha	78.18	3.00e-179	620.00
IUUC-Ogl-077302	Oryza glaberrima	64.36	0.00e+00	729.00
IUUC-Ogu-078718	Oryza glumaepatula	73.18	0.00e+00	630.00
IUUC-Olo-080427	Oryza longistaminata	61.89	0.00e+00	662.00
IUUC-Ome-081696	Oryza meridionalis	71.53	3.00e-176	610.00
IUUC-Oni-082137	Oryza nivara	73.18	0.00e+00	630.00
IUUC-Opu-083505	Oryza punctata	61.89	0.00e+00	695.00
IUUC-Oru-085276	Oryza rufipogon	72.94	0.00e+00	627.00
IUUC-Osa-085791	Oryza sativa	73.18	0.00e+00	630.00
IUUC-Ppa-095868	Physcomitrella patens	71.72	4.00e-161	560.00
IUUC-Pop-098989	Populus trichocarpa	79.05	2.00e-178	617.00
IUUC-Ppe-101572	Prunus persica	76.18	2.00e-172	598.00
IUUC-Smo-109301	Selaginella moellendorffii	72.93	2.00e-162	564.00
IUUC-Sit-110710	Setaria italica	78.41	0.00e+00	643.00
IUUC-Sbi-114420	Sorghum bicolor	77.89	0.00e+00	644.00
IUUC-Sre-115175	Sporisorium reilianum	40.32	3.00e-56	212.00
IUUC-Tca-121739	Theobroma cacao	71.29	4.00e-179	620.00
IUUC-Tae-125368	Triticum aestivum	76.53	2.00e-177	614.00
IUUC-Tur-126856	Triticum urartu	55.20	3.00e-119	421.00
IUUC-Tme-127126	Tuber melanosporum	35.31	2.00e-48	186.00
IUUC-Tbe-127767	Tupaia belangeri	62.16	1.00e-114	405.00
IUUC-Vvi-131193	Vitis vinifera	75.97	0.00e+00	634.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence