iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Zm00001d044641	Zm00001d044641_T002	Zm00001d044641_T002
Zm00001d044641	Zm00001d044641_T001	Zm00001d044641_T001
Zm00001d044641	Zm00001d044641_T009	Zm00001d044641_T009
Zm00001d044641	Zm00001d044641_T004	Zm00001d044641_T004
Zm00001d044641	Zm00001d044641_T007	Zm00001d044641_T007
Zm00001d044641	Zm00001d044641_T008	Zm00001d044641_T008

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.20e-22	81.0	271	309

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sd.tllvsGsdDgtikvWDlrtgvll 36
           gHt+sv +l++  ++ ++++s+s Dgti +WD+rtg+++
   Q: 271  GHTASVEDLQWspTEaDIFASCSVDGTISIWDVRTGKKP 309
           8***********66699*******************986 PP

Organism

Zea mays

Protein Sequence
(Fasta)

MGRTIKKARK AKPKKSKKKT EASSSSNHAV ASGPAKVWQP GVDALEDGEE LQFDPEAYNY 60
LRGFGIGWSC LSFDVVRDQL RLVRSEFPHT LYGVAGTQAE KASLNYIGVF KLSNINGKKR 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GTCCACGGCC GCCGCCAACA ACGAGTTCCT GACCTCCGCC GTCTCTTCCC CGCTCCCTCG 60
CGCTCGCAGT CGCAGCTCCG GCCGCCCTAT TTTGCGGAAT TCGGTAGATT TGTTTCCTTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR022052--Histone-bd_RBBP4_N
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF12265--CAF1C_H4-bd
PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005634--C:nucleus

KEGG

zma:103651663

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Bol-015126	Brassica oleracea	64.46	4.00e-164	570.00
IUUC-Bra-017677	Brassica rapa	71.21	2.00e-74	271.00
IUUC-Cme-027129	Cyanidioschyzon merolae	36.22	8.00e-50	191.00
IUUC-Dor-030773	Dipodomys ordii	46.12	2.00e-43	169.00
IUUC-Olu-087594	Ostreococcus lucimarinus	44.70	7.00e-103	366.00
IUUC-Spo-108351	Schizosaccharomyces pombe	39.45	6.00e-82	297.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence