iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
Mentha
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	1.10e-07	33.1	159	201

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf..kdgplvlp.CgHvfhadClqkwpglknssskefrCPlCr 46
           C++Cl++f   + +++lp C+H+fh  C+  w       + + +CPlCr
   Q: 159  CSVCLSEFqeNESLRLLPkCNHAFHVPCIDTW------LKSHSNCPLCR 201
           ********6544499999**************......**********8 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MGSTGNPNPW GTTYDSYRDC SQGVCSVYCP QWCYVIFPPP PSFYLDDEDD SSSSDFSPLL 60
IALIGILASA FILVSYYTLI SKYCHRRRHN SSSTSAAAIN RISSDYTWQG TNNNNNNGAT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TAAAGCAAAT TCTACACCTT TATTCATACT AGAAATAAAA ATTTGATAAA GTAGAACATT 60
CACTATAAAC ATCATTCAAT TAGTATTAAC ACCATCATGC AAAAGCTTTC ATGAACATAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0808--Transferase
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0080167--P:response to karrikin

KEGG

ath:AT3G03550

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-006095	Arabidopsis lyrata	87.74	1.00e-155	541.00
IUUC-Bol-016002	Brassica oleracea	60.82	8.00e-87	312.00
IUUC-Bra-017763	Brassica rapa	58.56	2.00e-84	305.00
IUUC-Lpe-051459	Leersia perrieri	54.07	3.00e-49	188.00
IUUC-Mtr-058411	Medicago truncatula	54.90	2.00e-51	195.00
IUUC-Obr-076311	Oryza brachyantha	49.15	5.00e-53	200.00
IUUC-Ogl-077644	Oryza glaberrima	56.44	6.00e-49	187.00
IUUC-Olo-081066	Oryza longistaminata	55.22	3.00e-48	185.00
IUUC-Pop-099293	Populus trichocarpa	46.54	3.00e-63	234.00
IUUC-Sit-109894	Setaria italica	48.37	2.00e-56	212.00
IUUC-Stu-112707	Solanum tuberosum	57.07	6.00e-49	186.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence