iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-098976

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Zinc finger family protein

Genbank Nucleotide ID

CM000338

Gene Name

POPTRDRAFT_596113; POPTR_0002s23000g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0002s23000	POPTR_0002s23000.1	POPTR_0002s23000.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	1.60e-07	32.8	111	153

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf...kdgplvlp.CgHvfhadClqkwpglknssskefrCPlCr 46
           Ca+Cl++f   ++  +vlp C+H fh++C+ +w         + +CPlCr
   Q: 111  CAVCLSEFeenER-GRVLPkCNHSFHTECIDMW------FHSHSTCPLCR 153
           ********77655.677888*************......9999******8 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MDPGSRDPPP EYREGYALSG KIMLSAIVIL FFVVILMVFL HLYARWYLTR ARQRQVRRVR 60
NRRTHLVFYV DSAQDPNNVT SHVTRGLEET VKNSLPVFVY SRKTHQDSIE CAVCLSEFEE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TTTCTAAACC AAACCCGTTA TCCTTCTCTT TCTCTTAAGC ACACAAGAAT CAAAATTTGA 60
GTCCATTTAT TCAAGAAATG GACCCAGGCT CGAGAGATCC ACCACCTGAA TACAGAGAAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

pop:POPTR_0002s23000g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-005973	Arabidopsis lyrata	53.79	2.00e-51	195.00
IUUC-Ath-006860	Arabidopsis thaliana	50.83	4.00e-46	177.00
IUUC-Bol-015679	Brassica oleracea	51.44	1.00e-44	172.00
IUUC-Bra-017659	Brassica rapa	49.56	5.00e-44	170.00
IUUC-Mac-065089	Musa acuminata	56.41	4.00e-23	100.00
IUUC-Ppe-101773	Prunus persica	46.23	6.00e-47	180.00
IUUC-Sly-111104	Solanum lycopersicum	52.03	9.00e-65	239.00
IUUC-Stu-112132	Solanum tuberosum	52.50	9.00e-62	229.00
IUUC-Tca-121512	Theobroma cacao	53.29	2.00e-58	218.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence