iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-007551

UUCD1 version

UUC-ArT-00361

Ensembl Protein ID

AT2G42030.1

UniProt Accession

P93744; P93744_ARATH

Genbank Protein ID

AAB63541.1; AAL25597.1; AAL59939.1; AAM20300.1; AEC10064.1

Protein Name

At2g42030/T6D20.8; Putative RING zinc finger protein; RING/U-box superfamily protein

Genbank Nucleotide ID

U90439; AY058184; AY072117; AY096666; CP002685

Gene Name

At2g42030; T6D20.8; T6D20_8

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT2G42030	AT2G42030.1	AT2G42030.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	5.60e-07	30.4	138	192
E3 activity/RING/RING	1.20e-08	36.2	141	181

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 5    eflCpIslelMrdPvvlpsGitydrssIekwlasggk.tcPvtrqplteedlvPn 58
           +f C I l+l +dPvv+ +G+ y  s++ +wl+ ++  +cPv++ +++ ++++P 
   Q: 138  FFDCYICLDLSKDPVVTNCGHLYCWSCLYQWLQVSEAkECPVCKGEVSVKTVTPI 192
           79******************************5555449********99999996 PP

E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           C iCl+  kd p+v++CgH+++ +Cl++w     + s +  CP+C+
   Q: 141  CYICLDLSKD-PVVTNCGHLYCWSCLYQW----LQVSEAKECPVCK 181
           99********.999***************....88999999****7 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MGEEISSTVN LDLNLGPDPE LGLEPATNYA RSDWGNGLAA RESESLRRFR SRYRSRFRRI 60
DMLPVLAETH SPAMELSQLL ITSGNVVALP AGEGSMASGE RVIEDSKKCE NGSKVMAEDN 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GTTTGATAAT TGCATTTAAT GAATTATCTT TATCTTTATT CAACTTTAAC CAATAATAAA 60
TTAATTACAT TTTACCAAAT CAATATAAAT AGATGAGATT TATTAAAAAA AGAAAACTAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS00518--ZF_RING_1
PS50089--ZF_RING_2

SMART

SM00184--RING

Gene Ontology

GO:0036513--C:Derlin-1 retrotranslocation complex
GO:1904264--F:ubiquitin protein ligase activity involved in ERAD pathway
GO:0044390--F:ubiquitin-like protein conjugating enzyme binding
GO:0008270--F:zinc ion binding
GO:0071712--P:ER-associated misfolded protein catabolic process
GO:0042787--P:protein ubiquitination involved in ubiquitin-dependent protein catabolic process

KEGG

ath:AT2G42030

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-005506	Arabidopsis lyrata	88.09	0.00e+00	644.00
IUUC-Bgr-012018	Blumeria graminis	38.75	1.00e-12	66.60
IUUC-Bol-015771	Brassica oleracea	59.18	1.00e-99	355.00
IUUC-Bra-017387	Brassica rapa	58.29	7.00e-98	349.00
IUUC-Cho-024282	Choloepus hoffmanni	41.10	4.00e-08	53.10
IUUC-Fso-038195	Fusarium solani	38.03	4.00e-11	62.00
IUUC-Kpa-049392	Komagataella pastoris	40.82	1.00e-08	53.10
IUUC-Mac-064666	Musa acuminata	43.62	1.00e-32	134.00
IUUC-Sbi-114045	Sorghum bicolor	56.00	1.00e-30	126.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence