iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-007229

UUCD1 version

UUC-ArT-00680

Ensembl Protein ID

AT5G20885.1

UniProt Accession

Q93ZD8; Q93ZD8_ARATH

Genbank Protein ID

AAL14405.1; AAN33188.1; AED92900.1; BAC42862.1

Protein Name

AT5g20880/F22D1_50; At5g20880/F22D1_50; Putative uncharacterized protein At5g20885/At5g20880; RING/U-box superfamily protein

Genbank Nucleotide ID

AY057610; BT000813; CP002688; AK118243

Gene Name

At5g20885; At5g20885/At5g20880

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT5G20885	AT5G20885.1	AT5G20885.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
Protein-protein Interaction
HINT
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	5.70e-09	37.2	82	139

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledfkdg..plvlp.CgHvfhadClqkw.........pglknssskefrCPlCr 46
           Ca+Cl d++dg  ++ l+ C H+fh++C+ +w          +   ++ ++ +CPlCr
   Q: 82   CAVCLGDLEDGdeVRELRnCSHMFHRECIDRWldyeccggdENNEGEEDNHRTCPLCR 139
           ********65544887778*********************96666679*********8 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MSFFIEDSGL IVTQLLYKMA VLITVLRWIL AWILRYRSRS RSTSSSTSAC PSISSQAIKE 60
SLSVTTFRDA AERSPAMIND TCAVCLGDLE DGDEVRELRN CSHMFHRECI DRWLDYECCG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTAAAATGAA AATAGTAGAA AAATTTAAAG GCTCCACTAA TAAAGATAAA GCAAAGCATC 60
ATCATTCATC AGCAACAAGC AGCTTTATTC CTCTATTAAA AACGAATCTC ATTCTCCACT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

ath:AT5G20885

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002811	Amborella trichopoda	35.11	8.00e-27	112.00
IUUC-Aly-005461	Arabidopsis lyrata	91.57	2.00e-84	303.00
IUUC-Bol-016175	Brassica oleracea	83.52	5.00e-68	249.00
IUUC-Bra-017937	Brassica rapa	82.86	6.00e-74	268.00
IUUC-Gma-043552	Glycine max	46.07	2.00e-32	130.00
IUUC-Pop-098796	Populus trichocarpa	55.06	1.00e-34	138.00
IUUC-Ppe-101734	Prunus persica	44.50	1.00e-32	132.00
IUUC-Tca-121834	Theobroma cacao	57.92	1.00e-43	168.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence