iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Aly-005651

Ensembl Protein ID

fgenesh1_pg.C_scaffold_5001699

UniProt Accession

D7LU24; D7LU24_ARALL

Genbank Protein ID

EFH52383.1

Protein Name

PHD finger family protein

Genbank Nucleotide ID

GL348717

Gene Name

ARALYDRAFT_348307

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
fgenesh1_pg.C_scaffold_5001699	fgenesh1_pg.C_scaffold_5001699	fgenesh1_pg.C_scaffold_5001699

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	3.20e-12	47.1	279	336

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 2    kvClvCgeggedek..slveCekCrewfHpaClkls....veeelpnsekwiCpkCrs 53
           ++C+vC + ++d++   +v+C+ C++w+H +C ++s    ++ ++ ++ ++ C+ Cr 
   Q: 279  NYCPVCLKVYRDSEatPMVCCDFCQRWVHCHCDGISdekyMQFQVDGNLQYKCSTCRG 336
           79**********99878888888*************77776667777777******85 PP

Organism

Arabidopsis lyrata

Protein Sequence
(Fasta)

MAFHVACPIT CRKICFCVLG FPRNLHGKEV KDVFLNRIHS LEECLLNPWN AEVSKDGTVQ 60
IHVPKLAVFD TGPRIAARNV GIGSDSAMEV FAASSNLVPA KRTVVLQKKV LEDYAVNDGS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCCTTTC ACGTAGCTTG TCCAATTACA TGGTATGTTT TTTTTCCTCT TCTCAAATCT 60
TTTTTTTCTT TTCTTTTGGC GCCTCCTCTA TACTCTTCGG CTTTGTTTGT TTTTTTTTAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR019786--Zinc_finger_PHD-type_CS
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS01359--ZF_PHD_1
PS50016--ZF_PHD_2

SMART

SM00249--PHD

Gene Ontology

GO:0009506--C:plasmodesma
GO:0008270--F:zinc ion binding

KEGG

aly:ARALYDRAFT_348307

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ath-007609	Arabidopsis thaliana	90.95	0.00e+00	1217.00
IUUC-Bol-015472	Brassica oleracea	76.91	0.00e+00	884.00
IUUC-Bra-017404	Brassica rapa	77.03	0.00e+00	907.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence