iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Details
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-007026

UUCD1 version

UUC-ArT-00551

Ensembl Protein ID

AT3G55530.1

UniProt Accession

Q9M2S6; SDIR1_ARATH

Genbank Protein ID

CAB75911.1; AEE79397.1; AAK62440.1; AAP13413.1; BAH19748.1

Protein Name

E3 ubiquitin-protein ligase SDIR1; Protein salt- and drought-induced RING finger1; RING-type E3 ubiquitin transferase SDIR1

Genbank Nucleotide ID

AL132975; CP002686; AF386995; BT006305; AK317055

Gene Name

SDIR1; At3g55530; T22E16.190

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT3G55530	AT3G55530.1	AT3G55530.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein Expression/Proteomics
GPMDB

Status

Reviewed

Details

Family	Domain	References (PMIDs)
E3 activity/RING/RING	RING	19941154

Classification

Family	E-value	Score	Start	End
E3 activity/RING/RING	4.20e-08	34.5	211	252

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf..kdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           C++Cle     + +++lpC H+fha C+  w       +++ +CP+C+
   Q: 211  CSVCLEQVtvGEIVRTLPCLHQFHAGCIDPW------LRQQGTCPVCK 252
           9*****9966444******************......**********7 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

E3 ubiquitin-protein ligase that acts as a positive regulator of abscisic acid-related stress signal transduction.

Protein Sequence
(Fasta)

MSFVFRGSRG DLESGFSGGF LPERRAMRVH GARPVNSNSL AFLVTVLLLF MILNSHQMPP 60
NFLLWLVLGV FLMATTLRMY ATCQQLQAHA QAQAAAASGL FSHTELRLHV PPSIALATRG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AGACAAAAAC TATATCCTCA GGTTAGCGAT AACTCGGTCC GAGTCGACTC GGTCCGACAA 60
GCGATTTTCG TGACTCCGTC GTCACCACGC CTATGTTAAG TGAGTAAATC CGACTCTTCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0256--Endoplasmic reticulum
KW-0472--Membrane
KW-0479--Metal-binding
KW-0492--Microsome
KW-1185--Reference proteome
KW-0808--Transferase
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0005783--C:endoplasmic reticulum
GO:0016021--C:integral component of membrane
GO:0043231--C:intracellular membrane-bounded organelle
GO:0031090--C:organelle membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding
GO:0009789--P:positive regulation of abscisic acid-activated signaling pathway
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0000209--P:protein polyubiquitination
GO:0016567--P:protein ubiquitination
GO:0042787--P:protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:0009737--P:response to abscisic acid
GO:0009651--P:response to salt stress
GO:0009414--P:response to water deprivation

KEGG

ath:AT3G55530

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000396	Aegilops tauschii	53.14	1.00e-60	226.00
IUUC-Atr-002651	Amborella trichopoda	67.16	2.00e-75	274.00
IUUC-Aly-006305	Arabidopsis lyrata	96.70	3.00e-135	473.00
IUUC-Bdi-015038	Brachypodium distachyon	64.18	3.00e-73	267.00
IUUC-Bol-015365	Brassica oleracea	91.67	3.00e-112	397.00
IUUC-Bra-017904	Brassica rapa	92.78	1.00e-112	398.00
IUUC-Cre-022982	Chlamydomonas reinhardtii	62.00	1.00e-14	73.20
IUUC-Cme-027166	Cyanidioschyzon merolae	45.59	9.00e-14	68.90
IUUC-Fox-038011	Fusarium oxysporum	45.71	3.00e-15	75.90
IUUC-Fso-038141	Fusarium solani	43.53	5.00e-16	78.60
IUUC-Gma-044260	Glycine max	76.81	2.00e-95	341.00
IUUC-Hvu-047764	Hordeum vulgare	65.00	2.00e-62	231.00
IUUC-Lpe-051371	Leersia perrieri	65.85	1.00e-71	262.00
IUUC-Mtr-058078	Medicago truncatula	77.54	2.00e-96	344.00
IUUC-Mac-065090	Musa acuminata	70.36	4.00e-66	243.00
IUUC-Oba-075903	Oryza barthii	59.69	1.00e-28	118.00
IUUC-Obr-076184	Oryza brachyantha	59.43	3.00e-63	234.00
IUUC-Ogl-076965	Oryza glaberrima	65.96	6.00e-73	266.00
IUUC-Ogu-078414	Oryza glumaepatula	58.80	3.00e-59	220.00
IUUC-Oin-079430	Oryza indica	65.96	7.00e-73	266.00
IUUC-Olo-080739	Oryza longistaminata	65.61	2.00e-72	265.00
IUUC-Ome-081538	Oryza meridionalis	65.96	5.00e-73	267.00
IUUC-Oni-082633	Oryza nivara	65.96	5.00e-73	267.00
IUUC-Opu-084125	Oryza punctata	66.32	8.00e-72	262.00
IUUC-Oru-085061	Oryza rufipogon	58.80	3.00e-59	220.00
IUUC-Osa-086209	Oryza sativa	65.96	7.00e-73	266.00
IUUC-Ppa-095613	Physcomitrella patens	57.40	1.00e-54	205.00
IUUC-Pop-099435	Populus trichocarpa	77.90	2.00e-102	363.00
IUUC-Ppe-101792	Prunus persica	78.34	3.00e-99	353.00
IUUC-Smo-109389	Selaginella moellendorffii	62.02	1.00e-64	238.00
IUUC-Sit-110587	Setaria italica	78.12	3.00e-15	72.80
IUUC-Sly-111915	Solanum lycopersicum	74.01	1.00e-90	325.00
IUUC-Stu-112568	Solanum tuberosum	65.49	1.00e-76	280.00
IUUC-Sbi-113958	Sorghum bicolor	65.96	1.00e-73	268.00
IUUC-Tca-121397	Theobroma cacao	77.62	1.00e-100	358.00
IUUC-Tae-125370	Triticum aestivum	65.31	3.00e-62	230.00
IUUC-Tur-125977	Triticum urartu	60.98	1.00e-63	235.00
IUUC-Tbe-127906	Tupaia belangeri	41.56	3.00e-13	68.20
IUUC-Vvi-131326	Vitis vinifera	79.71	3.00e-92	330.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence