iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Lma-053088

Ensembl Protein ID

CBX95613

UniProt Accession

E4ZVI7; E4ZVI7_LEPMJ

Genbank Protein ID

CBX95613.1

Protein Name

Similar to U4/U6 small nuclear ribonucleoprotein Prp4

Genbank Nucleotide ID

FP929127

Gene Name

LEMA_P027650.1

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
LEMA_P027650.1	CBX95613	CBX95613

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.50e-35	119.0	372	404
UBD/Beta-Prp	9.60e-53	178.6	191	422

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDlrt 32
           H  ++++l++ +d ++l+sGs+Dg +k+WD+r 
   Q: 372  HIKPIYGLDWaTDgHRLLSGSGDGFMKCWDVRA 404
           7789*******99899**************986 PP

UBD/Beta-Prp

   S: 8    hhksvitcvkfspdksllatgsrdgtikvwdvttgkllrsl.sgheae...........vtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkgheds 96
           + + +++ v +sp+++++a g + g++++ ++ + +  + +   h++              + + s ++  +++g+  + i++w+l++ k+++tl+gh+d+
   Q: 191  TADRPVSIVRVSPNGQYIAYGTWGGKVTLLEIPSLTQKKAYrGAHTERttgidwmpgatLPDSQVSTSSVNFASGGAGGKIQLWSLEDDKPLRTLEGHTDR 291
           56789999*******************8887665444333322333333455555555544444444444899999************************* PP
   S: 97   vlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvs 197
           v+ l+f+psg +l+s+s+d t r+wd++tgq+l  t++gh++ v  v++++dg+l++s++lD++ r+Wd++tg++++ l++ h +++y l++  +g +l+s
   Q: 292  VCRLAFHPSGRYLASASDDTTWRLWDVNTGQELL-TQEGHSKEVYAVSFNGDGSLIASAGLDSIGRVWDIRTGRVIYMLES-HIKPIYGLDWATDGHRLLS 390
           **********************************.*********************************************9.******************* PP
   S: 198  gsldgtvklwdlqtgecvrtlnghtdnvksvr 229
           gs dg  k wd+++ +  ++  + t  v+++r
   Q: 391  GSGDGFMKCWDVRAMRETNSIAANTGGVTDLR 422
           *************7776777777777766665 PP

Organism

Leptosphaeria maculans

Protein Sequence
(Fasta)

MSMHPARQAY VEEENGGDGA MDGIDFGNVP IDRDHALPGA GNQNAATLMD EFDRKRRAAQ 60
LIVPTADRHV KAKLRSLGEP ITLFGEGPSE RRDRLRALLA DAAEALGQDA ADVEMQEADD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGAGTATGC ATCCGGCGCG TCAGGCCTAT GTGGAGGAGG AAAATGGCGG GGTGAGTTGC 60
TTTTAGACTT GGCAATTAGG CAAGAGAGAT GCCTTCACGT GCTTGACGAG CTGTCTATGT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0687--Ribonucleoprotein
KW-0543--Viral nucleoprotein
KW-0946--Virion
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR014906--PRP4-like
IPR027295--Quinoprotein_ADH-like_fam
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08799--PRP4
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00500--SFM
SM00320--WD40

Gene Ontology

GO:0030529--C:intracellular ribonucleoprotein complex
GO:0019013--C:viral nucleocapsid

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000771	Aegilops tauschii	37.06	9.00e-70	255.00
IUUC-Aml-001737	Ailuropoda melanoleuca	37.55	4.00e-85	306.00
IUUC-Atr-002828	Amborella trichopoda	36.48	5.00e-71	259.00
IUUC-Apl-003723	Anas platyrhynchos	37.95	2.00e-86	311.00
IUUC-Aca-004972	Anolis carolinensis	37.02	7.00e-83	299.00
IUUC-Aly-006531	Arabidopsis lyrata	36.40	4.00e-65	240.00
IUUC-Ath-007367	Arabidopsis thaliana	36.62	3.00e-74	270.00
IUUC-Ago-007893	Ashbya gossypii	34.62	1.00e-65	242.00
IUUC-Acl-008236	Aspergillus clavatus	53.47	2.00e-152	530.00
IUUC-Afl-008522	Aspergillus flavus	56.25	3.00e-159	553.00
IUUC-Afu-008904	Aspergillus fumigatus	53.38	2.00e-154	537.00
IUUC-Ani-009198	Aspergillus nidulans	56.13	1.00e-159	554.00
IUUC-Ang-009662	Aspergillus niger	54.83	5.00e-153	532.00
IUUC-Aor-009881	Aspergillus oryzae	55.11	2.00e-157	547.00
IUUC-Ate-010333	Aspergillus terreus	55.35	4.00e-146	509.00
IUUC-Ame-011697	Astyanax mexicanus	36.90	4.00e-87	313.00
IUUC-Bgr-012254	Blumeria graminis	54.46	3.00e-164	570.00
IUUC-Bta-012615	Bos taurus	38.30	5.00e-84	303.00
IUUC-Bci-013720	Botrytis cinerea	56.51	3.00e-165	573.00
IUUC-Bdi-014302	Brachypodium distachyon	37.76	2.00e-74	271.00
IUUC-Bol-015594	Brassica oleracea	37.71	5.00e-70	257.00
IUUC-Bra-017465	Brassica rapa	37.29	2.00e-69	254.00
IUUC-Cel-018632	Caenorhabditis elegans	34.85	4.00e-71	260.00
IUUC-Cja-019747	Callithrix jacchus	37.55	3.00e-85	307.00
IUUC-Cfa-020288	Canis familiaris	37.55	3.00e-85	307.00
IUUC-Cpo-021440	Cavia porcellus	37.70	1.00e-84	305.00
IUUC-Cre-022716	Chlamydomonas reinhardtii	35.86	6.00e-57	213.00
IUUC-Csa-023139	Chlorocebus sabaeus	36.44	9.00e-65	238.00
IUUC-Cho-024481	Choloepus hoffmanni	37.02	3.00e-78	283.00
IUUC-Cin-025106	Ciona intestinalis	34.62	7.00e-77	279.00
IUUC-Csv-026087	Ciona savignyi	35.63	1.00e-77	282.00
IUUC-Cgl-026538	Colletotrichum gloeosporioides	58.43	9.00e-165	572.00
IUUC-Cne-026793	Cryptococcus neoformans	43.68	2.00e-101	361.00
IUUC-Dre-028723	Danio rerio	37.80	2.00e-83	301.00
IUUC-Dno-029299	Dasypus novemcinctus	37.35	6.00e-85	306.00
IUUC-Dse-031562	Dothistroma septosporum	56.63	2.00e-162	563.00
IUUC-Dme-031783	Drosophila melanogaster	34.89	2.00e-73	268.00
IUUC-Ete-032669	Echinops telfairi	37.75	1.00e-85	308.00
IUUC-Eca-033566	Equus caballus	37.55	6.00e-85	306.00
IUUC-Eeu-034524	Erinaceus europaeus	42.42	1.00e-53	202.00
IUUC-Fca-036215	Felis catus	37.55	3.00e-85	307.00
IUUC-Fal-037018	Ficedula albicollis	39.37	6.00e-76	276.00
IUUC-Fox-037936	Fusarium oxysporum	55.73	2.00e-165	573.00
IUUC-Fso-038366	Fusarium solani	56.79	1.00e-166	577.00
IUUC-Gmo-038966	Gadus morhua	32.89	2.00e-56	211.00
IUUC-Ggr-039942	Gaeumannomyces graminis	56.58	2.00e-167	580.00
IUUC-Gga-040797	Gallus gallus	37.75	6.00e-86	309.00
IUUC-Gac-042598	Gasterosteus aculeatus	35.90	2.00e-79	288.00
IUUC-Gma-044220	Glycine max	36.86	2.00e-71	261.00
IUUC-Ggo-044682	Gorilla gorilla	37.47	7.00e-85	306.00
IUUC-Hsa-045804	Homo sapiens	37.55	2.00e-85	308.00
IUUC-Hvu-047567	Hordeum vulgare	37.85	4.00e-71	259.00
IUUC-Itr-047882	Ictidomys tridecemlineatus	37.35	1.00e-84	305.00
IUUC-Kpa-049369	Komagataella pastoris	36.43	1.00e-66	245.00
IUUC-Lch-050074	Latimeria chalumnae	36.74	4.00e-74	270.00
IUUC-Lpe-051333	Leersia perrieri	38.33	9.00e-67	245.00
IUUC-Loc-052164	Lepisosteus oculatus	37.04	2.00e-84	305.00
IUUC-Laf-053460	Loxodonta africana	37.55	3.00e-85	307.00
IUUC-Mcc-055859	Macaca mulatta	37.55	3.00e-85	307.00
IUUC-Meu-056134	Macropus eugenii	36.95	1.00e-85	308.00
IUUC-Mor-057251	Magnaporthe oryzae	52.64	6.00e-150	522.00
IUUC-Mpo-057375	Magnaporthe poae	62.02	3.00e-96	342.00
IUUC-Mtr-058546	Medicago truncatula	37.19	4.00e-69	253.00
IUUC-Mla-059145	Melampsora laricipopulina	43.46	7.00e-98	349.00
IUUC-Mga-059855	Meleagris gallopavo	37.75	1.00e-85	308.00
IUUC-Mvi-060372	Microbotryum violaceum	39.41	2.00e-80	291.00
IUUC-Mmr-060826	Microcebus murinus	37.55	6.00e-85	306.00
IUUC-Mdo-062748	Monodelphis domestica	36.75	5.00e-85	306.00
IUUC-Mmu-063351	Mus musculus	37.55	4.00e-85	306.00
IUUC-Mac-064846	Musa acuminata	34.91	2.00e-62	231.00
IUUC-Mpu-066006	Mustela putorius furo	37.55	3.00e-85	307.00
IUUC-Mlu-067398	Myotis lucifugus	37.35	1.00e-84	305.00
IUUC-Nfi-068399	Neosartorya fischeri	53.38	3.00e-162	563.00
IUUC-Ncr-068711	Neurospora crassa	56.76	6.00e-171	592.00
IUUC-Nle-069982	Nomascus leucogenys	37.55	3.00e-85	307.00
IUUC-Opr-070596	Ochotona princeps	37.55	2.00e-85	308.00
IUUC-Ont-072374	Oreochromis niloticus	36.55	1.00e-78	285.00
IUUC-Oan-073166	Ornithorhynchus anatinus	35.84	4.00e-71	259.00
IUUC-Ocu-074371	Oryctolagus cuniculus	37.75	1.00e-85	308.00
IUUC-Oba-075083	Oryza barthii	38.33	5.00e-71	259.00
IUUC-Obr-076405	Oryza brachyantha	38.33	8.00e-69	252.00
IUUC-Ogl-077683	Oryza glaberrima	38.33	8.00e-71	259.00
IUUC-Ogu-078486	Oryza glumaepatula	38.12	5.00e-70	256.00
IUUC-Oin-079679	Oryza indica	38.12	5.00e-74	270.00
IUUC-Olo-080243	Oryza longistaminata	38.28	8.00e-64	235.00
IUUC-Ome-081230	Oryza meridionalis	38.12	5.00e-74	270.00
IUUC-Oni-082961	Oryza nivara	38.12	7.00e-74	269.00
IUUC-Opu-083189	Oryza punctata	38.12	6.00e-71	259.00
IUUC-Oru-084353	Oryza rufipogon	38.24	7.00e-72	262.00
IUUC-Osa-085458	Oryza sativa	38.12	5.00e-74	270.00
IUUC-Ola-086940	Oryzias latipes	37.33	1.00e-87	315.00
IUUC-Olu-087580	Ostreococcus lucimarinus	35.19	4.00e-54	203.00
IUUC-Oga-088703	Otolemur garnettii	35.54	3.00e-76	277.00
IUUC-Oar-089829	Ovis aries	38.30	1.00e-83	302.00
IUUC-Ptr-090838	Pan troglodytes	37.55	2.00e-85	308.00
IUUC-Pan-092261	Papio anubis	36.36	7.00e-86	309.00
IUUC-Psi-093020	Pelodiscus sinensis	37.68	6.00e-86	310.00
IUUC-Pno-094858	Phaeosphaeria nodorum	85.66	0.00e+00	862.00
IUUC-Ppa-095531	Physcomitrella patens	36.02	8.00e-77	279.00
IUUC-Pfo-096812	Poecilia formosa	33.85	2.00e-63	234.00
IUUC-Pab-097805	Pongo abelii	33.07	9.00e-66	242.00
IUUC-Pop-100051	Populus trichocarpa	34.87	3.00e-70	257.00
IUUC-Pca-100152	Procavia capensis	37.55	5.00e-85	306.00
IUUC-Ppe-101244	Prunus persica	37.31	4.00e-72	263.00
IUUC-Pva-102529	Pteropus vampyrus	36.14	2.00e-77	281.00
IUUC-Pgr-103550	Puccinia graminis	41.99	1.00e-104	371.00
IUUC-Ptt-103951	Puccinia triticina	35.81	2.00e-85	308.00
IUUC-Pte-104151	Pyrenophora teres	87.18	0.00e+00	873.00
IUUC-Pyt-104571	Pyrenophora triticirepentis	87.77	0.00e+00	886.00
IUUC-Rno-105747	Rattus norvegicus	37.55	6.00e-85	306.00
IUUC-Sce-106418	Saccharomyces cerevisiae	31.03	8.00e-63	232.00
IUUC-Sha-107334	Sarcophilus harrisii	36.95	2.00e-85	308.00
IUUC-Sja-107794	Schizosaccharomyces japonicus	37.08	4.00e-71	260.00
IUUC-Spo-108189	Schizosaccharomyces pombe	36.27	9.00e-77	278.00
IUUC-Ssl-108550	Sclerotinia sclerotiorum	55.94	4.00e-165	572.00
IUUC-Smo-109578	Selaginella moellendorffii	36.36	2.00e-69	254.00
IUUC-Sit-110102	Setaria italica	37.53	1.00e-71	262.00
IUUC-Sly-111668	Solanum lycopersicum	37.21	2.00e-74	271.00
IUUC-Stu-111928	Solanum tuberosum	37.00	3.00e-74	271.00
IUUC-Sar-113266	Sorex araneus	34.46	8.00e-65	239.00
IUUC-Sbi-114134	Sorghum bicolor	37.31	3.00e-71	261.00
IUUC-Sre-115114	Sporisorium reilianum	43.09	1.00e-96	345.00
IUUC-Ssc-115443	Sus scrofa	37.55	5.00e-85	306.00
IUUC-Tgu-117157	Taeniopygia guttata	38.09	1.00e-83	301.00
IUUC-Tru-118587	Takifugu rubripes	37.00	5.00e-80	290.00
IUUC-Tsy-119157	Tarsius syrichta	37.34	1.00e-71	261.00
IUUC-Tni-120427	Tetraodon nigroviridis	38.19	7.00e-81	292.00
IUUC-Tca-121368	Theobroma cacao	35.18	4.00e-73	267.00
IUUC-Tre-122074	Trichoderma reesei	55.36	2.00e-162	563.00
IUUC-Tvi-122349	Trichoderma virens	56.02	7.00e-164	568.00
IUUC-Tae-123589	Triticum aestivum	38.24	1.00e-71	262.00
IUUC-Tur-126532	Triticum urartu	39.59	1.00e-66	245.00
IUUC-Tme-126951	Tuber melanosporum	49.72	8.00e-132	462.00
IUUC-Tbe-128136	Tupaia belangeri	35.14	1.00e-71	262.00
IUUC-Ttr-129169	Tursiops truncatus	39.39	2.00e-48	184.00
IUUC-Uma-129399	Ustilago maydis	41.97	3.00e-99	353.00
IUUC-Vda-129842	Verticillium dahliae	57.85	1.00e-165	574.00
IUUC-Vpa-130440	Vicugna pacos	37.35	4.00e-85	306.00
IUUC-Vvi-131075	Vitis vinifera	36.71	2.00e-75	275.00
IUUC-Xma-133002	Xiphophorus maculatus	35.86	2.00e-64	238.00
IUUC-Yli-134569	Yarrowia lipolytica	35.47	1.00e-69	255.00
IUUC-Zma-135799	Zea mays	35.15	2.00e-68	251.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence