iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Details
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-006867

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

RING/U-box superfamily protein

Genbank Nucleotide ID

CP002686

Gene Name

At3g06330; F24P17.21; F24P17_21

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT3G06330	AT3G06330.3	AT3G06330.3
AT3G06330	AT3G06330.1	AT3G06330.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
Protein Expression/Proteomics
GPMDB

Status

Reviewed

Details

Family	Domain	References (PMIDs)
E3 activity/RING/RING	RING	16339806

Classification

Family	E-value	Score	Start	End
E3 activity/RING/RING	0.93	11.0	218	265

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledfkdg.plvlpCg.....HvfhadClqkwpglknssskefrCPlCr 46
           C iCl+ +++g +l + C      ++ h+ C  kw     s++++ +C +Cr
   Q: 218  CRICLDVCEEGnTLKMECSckgdlRLVHEACAMKW----FSTKGTRTCDVCR 265
           ********7776777888522333669********....9***********8 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MKMQDSAAQE PEIAIIVGDS SSSSLHSSSQ VTEKSTEDVP SCSHLDLSIQ IPSRSLPFGN 60
GRNPKGSLKS TPSFKSGTTS SPRGILRNLS LKKKVISQPE SERSSLLSPG LMETAKKPNA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CATACGTATA TTTAATTATT GATATAAGTG GATAAAAAAA AGTAACAATG TCATTGTCAG 60
TCGTGGATTC AGCTTAAATT TAATGAATAT AAACCACAAC TATTTCTTCA TTACTAGATT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR033275--MARCH-like
IPR011016--Znf_RING-CH
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51292--ZF_RING_CH

Pfam

PF12906--RINGv

SMART

SM00744--RINGv

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0008270--F:zinc ion binding

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-005565	Arabidopsis lyrata	91.16	0.00e+00	725.00
IUUC-Acl-008302	Aspergillus clavatus	45.71	7.70e-02	30.00
IUUC-Bol-015615	Brassica oleracea	78.10	4.00e-169	587.00
IUUC-Bra-017184	Brassica rapa	78.20	1.00e-174	605.00
IUUC-Gma-043613	Glycine max	51.41	2.00e-101	362.00
IUUC-Mtr-058058	Medicago truncatula	54.24	2.00e-107	381.00
IUUC-Mac-065242	Musa acuminata	45.79	2.00e-77	282.00
IUUC-Olu-087883	Ostreococcus lucimarinus	29.70	8.00e-12	63.20
IUUC-Pop-099515	Populus trichocarpa	57.84	4.00e-117	414.00
IUUC-Ppe-101242	Prunus persica	56.65	9.00e-101	359.00
IUUC-Sly-111220	Solanum lycopersicum	48.76	1.00e-82	299.00
IUUC-Stu-112321	Solanum tuberosum	51.26	1.00e-95	342.00
IUUC-Tca-121528	Theobroma cacao	58.31	2.00e-105	375.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence