iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Xtr-131893

Ensembl Protein ID

ENSXETP00000013339.4

UniProt Accession

Q6DF56; Q6DF56_XENTR

Genbank Protein ID

AAH76887.1; CAJ83074.1

Protein Name

Actin related protein 2/3 complex, subunit 1B; Actin related protein 2/3 complex, subunit 1B, 41kDa; Actin-related protein 2/3 complex subunit 1B

Genbank Nucleotide ID

AAMC01090752; CR760485

Gene Name

arpc1b; TNeu074g08.1-001

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSXETG00000006058.4	ENSXETT00000013339.4	ENSXETP00000013339.4
ENSXETG00000006058.4	ENSXETT00000064250.1	ENSXETP00000061113.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	6.80e-15	54.8	51	84

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDlrtg 33
           H++ vt++++ +d +++v+++ D + +vW lr +
   Q: 51   HNGQVTGIDWaPDsNRIVTCGTDRNAYVWTLRNN 84
           9**********999***************98765 PP

Organism

Xenopus tropicalis

Protein Sequence
(Fasta)

MAYHSFLLEP ITCHAWNKDA TQIAFCPNSH DVHIYKKDGD KWTKIHELKE HNGQVTGIDW 60
APDSNRIVTC GTDRNAYVWT LRNNVWKPTL VILRINRAAR CVKWSPKENK FAVGSGSRLI 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GGAAGTAGCA AAAAGCCTGG GCAGAGTCTG ATACAAGTTC CAGACATTCA GCATTCCGCT 60
GCATCTGTGT TGACTGCTCA GAGTCCACGG ACAGCAGCCG TCTTTCCCTG TACCTACTAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR030141--ARC1B
IPR017383--ARPC1
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005885--C:Arp2/3 protein complex
GO:0034314--P:Arp2/3 complex-mediated actin nucleation

KEGG

xtr:448555

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001709	Ailuropoda melanoleuca	81.65	0.00e+00	649.00
IUUC-Aly-005532	Arabidopsis lyrata	40.97	6.00e-77	280.00
IUUC-Ath-006683	Arabidopsis thaliana	41.29	2.00e-77	282.00
IUUC-Ame-011512	Astyanax mexicanus	80.98	0.00e+00	650.00
IUUC-Bta-012442	Bos taurus	81.40	0.00e+00	644.00
IUUC-Bdi-014632	Brachypodium distachyon	42.23	1.00e-75	276.00
IUUC-Bol-016274	Brassica oleracea	41.94	2.00e-79	289.00
IUUC-Bra-016790	Brassica rapa	41.40	1.00e-78	286.00
IUUC-Cel-018122	Caenorhabditis elegans	52.68	5.00e-104	370.00
IUUC-Cja-019899	Callithrix jacchus	83.38	0.00e+00	659.00
IUUC-Cfa-020067	Canis familiaris	82.53	0.00e+00	649.00
IUUC-Cpo-022461	Cavia porcellus	83.06	0.00e+00	655.00
IUUC-Cre-022590	Chlamydomonas reinhardtii	36.22	9.00e-36	142.00
IUUC-Csa-023277	Chlorocebus sabaeus	80.65	0.00e+00	633.00
IUUC-Dre-028141	Danio rerio	79.62	0.00e+00	635.00
IUUC-Dor-030559	Dipodomys ordii	83.33	0.00e+00	660.00
IUUC-Ete-032299	Echinops telfairi	81.99	0.00e+00	655.00
IUUC-Eca-033593	Equus caballus	81.50	0.00e+00	645.00
IUUC-Fca-036254	Felis catus	82.80	0.00e+00	655.00
IUUC-Fal-037453	Ficedula albicollis	85.71	0.00e+00	676.00
IUUC-Gmo-038471	Gadus morhua	72.04	1.00e-164	572.00
IUUC-Gga-040898	Gallus gallus	85.64	0.00e+00	679.00
IUUC-Gac-042236	Gasterosteus aculeatus	75.99	1.00e-177	615.00
IUUC-Gma-042803	Glycine max	41.30	2.00e-77	282.00
IUUC-Ggo-045355	Gorilla gorilla	68.10	2.00e-147	514.00
IUUC-Hsa-046623	Homo sapiens	82.80	0.00e+00	654.00
IUUC-Itr-048596	Ictidomys tridecemlineatus	83.60	0.00e+00	661.00
IUUC-Lch-049679	Latimeria chalumnae	81.25	0.00e+00	644.00
IUUC-Loc-052140	Lepisosteus oculatus	81.25	0.00e+00	635.00
IUUC-Laf-054287	Loxodonta africana	79.26	2.00e-180	624.00
IUUC-Meu-056302	Macropus eugenii	84.55	0.00e+00	671.00
IUUC-Mtr-057659	Medicago truncatula	41.42	1.00e-80	293.00
IUUC-Mla-058886	Melampsora laricipopulina	42.30	6.00e-87	314.00
IUUC-Mga-059279	Meleagris gallopavo	85.64	0.00e+00	680.00
IUUC-Mmr-060752	Microcebus murinus	84.17	0.00e+00	649.00
IUUC-Mdo-062836	Monodelphis domestica	80.49	0.00e+00	629.00
IUUC-Mmu-064099	Mus musculus	81.38	0.00e+00	646.00
IUUC-Mac-064632	Musa acuminata	43.05	5.00e-79	287.00
IUUC-Mpu-066247	Mustela putorius furo	81.99	0.00e+00	637.00
IUUC-Mlu-067571	Myotis lucifugus	83.83	0.00e+00	664.00
IUUC-Nle-069492	Nomascus leucogenys	72.04	3.00e-153	534.00
IUUC-Ont-071316	Oreochromis niloticus	77.31	1.00e-177	615.00
IUUC-Oan-072692	Ornithorhynchus anatinus	83.20	0.00e+00	662.00
IUUC-Ocu-074187	Oryctolagus cuniculus	80.97	0.00e+00	632.00
IUUC-Oga-088610	Otolemur garnettii	83.06	0.00e+00	655.00
IUUC-Oar-089639	Ovis aries	81.40	0.00e+00	636.00
IUUC-Ptr-091023	Pan troglodytes	82.80	0.00e+00	654.00
IUUC-Pan-091727	Papio anubis	83.60	0.00e+00	660.00
IUUC-Pfo-097058	Poecilia formosa	75.73	2.00e-175	608.00
IUUC-Pab-098238	Pongo abelii	83.06	0.00e+00	660.00
IUUC-Pca-100580	Procavia capensis	82.26	0.00e+00	642.00
IUUC-Ppe-101681	Prunus persica	42.39	6.00e-79	287.00
IUUC-Pva-102928	Pteropus vampyrus	79.57	1.00e-178	618.00
IUUC-Rno-104846	Rattus norvegicus	81.72	0.00e+00	650.00
IUUC-Sbi-114685	Sorghum bicolor	42.16	8.00e-75	273.00
IUUC-Tru-118106	Takifugu rubripes	74.60	4.00e-177	613.00
IUUC-Tni-120079	Tetraodon nigroviridis	76.19	4.00e-179	620.00
IUUC-Tca-121645	Theobroma cacao	42.43	8.00e-78	283.00
IUUC-Tae-123562	Triticum aestivum	41.74	6.00e-69	254.00
IUUC-Ttr-128698	Tursiops truncatus	82.80	0.00e+00	655.00
IUUC-Vvi-131647	Vitis vinifera	42.82	2.00e-79	289.00
IUUC-Xma-134089	Xiphophorus maculatus	75.99	7.00e-176	609.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence