iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
fgenesh2_kg.7__1301__AT4G28890.1	fgenesh2_kg.7__1301__AT4G28890.1	fgenesh2_kg.7__1301__AT4G28890.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	1.70e-07	32.3	125	167

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf...kdgplvlp.CgHvfhadClqkwpglknssskefrCPlCr 46
           C++Cl+ f   +  +++lp C H+fh  C+ +w        ++++CPlCr
   Q: 125  CSVCLSKFesiEI-LRLLPkCRHAFHIGCIDQW------LEQHATCPLCR 167
           9*****9955333.77888**************......**********8 PP

Organism

Arabidopsis lyrata

Protein Sequence
(Fasta)

MYQIFFFFLP LLHSYPHVYA QPPPPFRNGD LVANFEPSLA VVTGVLAIMF ALTFVLLVYA 60
KCCHIDLRSD SGDRRRHDRR LRQGIFFNRS TTSSDRFSGL DKTAIESLPL FRFSALKGSK 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTATCAAA TCTTCTTCTT CTTTCTTCCA CTCCTCCACA GTTACCCCCA TGTCTATGCT 60
CAGCCTCCTC CTCCGTTCAG AAACGGTGAC CTCGTCGCCA ATTTCGAGCC GAGTTTAGCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-1185--Reference proteome
KW-0732--Signal
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding

KEGG

aly:ARALYDRAFT_491868

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002959	Amborella trichopoda	51.65	8.00e-47	180.00
IUUC-Ath-007561	Arabidopsis thaliana	93.79	0.00e+00	734.00
IUUC-Bol-016028	Brassica oleracea	82.00	7.00e-172	595.00
IUUC-Bra-017519	Brassica rapa	76.83	0.00e+00	625.00
IUUC-Gma-043589	Glycine max	47.81	9.00e-90	323.00
IUUC-Mtr-057998	Medicago truncatula	42.33	1.00e-77	282.00
IUUC-Mac-064747	Musa acuminata	35.19	2.00e-62	232.00
IUUC-Obr-076167	Oryza brachyantha	31.48	2.00e-33	135.00
IUUC-Pop-099837	Populus trichocarpa	45.49	5.00e-84	304.00
IUUC-Ppe-101585	Prunus persica	49.07	3.00e-82	298.00
IUUC-Tca-121197	Theobroma cacao	47.56	6.00e-98	350.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence