iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Pop-098896

Ensembl Protein ID

POPTR_0005s23970.1

UniProt Accession

B9H8H0; B9H8H0_POPTR

Genbank Protein ID

EEE94621.1

Protein Name

Auxin-responsive protein

Genbank Nucleotide ID

CM000341

Gene Name

POPTR_0005s23970g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0005s23970	POPTR_0005s23970.1	POPTR_0005s23970.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
ULD/UDP/UFD/PB1	2.40e-19	70.4	101	186

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

ULD/UDP/UFD/PB1

   S: 2    vrvkvsykgeirsfaldlekpgkfedLlkavrt.lt..........elknsevalkYeDedGDlvtlksDedldkavsllaskksllrlli 81
           + vkvs +g+++++++dl+++ ++ +Llka++  ++          ++++se+a++YeD+dGD++ l++D+++d+++s      s++rl+i
   Q: 101  MYVKVSVDGAPYLRKIDLKVYKSYPELLKALENmFKltigeyseneGYNGSEFAPTYEDKDGDWM-LVGDVPWDMFIS------SCKRLRI 184
           579******************************7335588888888*******************.************......******* PP
   S: 82   qk 83
           +k
   Q: 185  MK 186
           *8 PP

Organism

Populus trichocarpa

Functional Description
(View)

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Protein Sequence
(Fasta)

MAYESDLNLK ATELRLGLPG SDEPEKPSTT PSVRSNKRAS PEISEESRSK GSSSVSSNVE 60
NGERDSAPPA KAQVVGWPPI RSYRKNCLQP KKNDQVDGAG MYVKVSVDGA PYLRKIDLKV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCATACG AAAGCGATCT AAATCTAAAG GCAACAGAAC TGAGGTTAGG GTTGCCTGGA 60
AGTGATGAGC CAGAGAAACC ATCAACTACT CCTAGTGTTA GGAGTAATAA GAGAGCCTCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0927--Auxin signaling pathway
KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0678--Repressor
KW-0804--Transcription
KW-0805--Transcription regulation

Interpro

IPR033389--AUX/IAA_dom
IPR003311--AUX_IAA
IPR000270--PB1_dom

PROSITE

PS51745--PB1

Pfam

PF02309--AUX_IAA

Gene Ontology

GO:0005634--C:nucleus
GO:0009734--P:auxin-activated signaling pathway
GO:0006355--P:regulation of transcription, DNA-templated
GO:0006351--P:transcription, DNA-templated

KEGG

pop:POPTR_0005s23970g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-006269	Arabidopsis lyrata	62.18	1.00e-65	241.00
IUUC-Ath-007238	Arabidopsis thaliana	62.37	4.00e-67	246.00
IUUC-Bol-015312	Brassica oleracea	64.40	1.00e-67	248.00
IUUC-Bra-018063	Brassica rapa	64.92	2.00e-67	247.00
IUUC-Gmo-038483	Gadus morhua	24.14	1.80e-01	28.90
IUUC-Gma-042959	Glycine max	75.63	5.00e-80	289.00
IUUC-Mtr-058771	Medicago truncatula	70.85	1.00e-74	271.00
IUUC-Mla-059044	Melampsora laricipopulina	35.56	3.40e-01	30.40
IUUC-Ogu-078093	Oryza glumaepatula	52.17	5.00e-48	183.00
IUUC-Sly-110939	Solanum lycopersicum	67.88	1.00e-67	248.00
IUUC-Stu-112670	Solanum tuberosum	67.36	1.00e-67	248.00
IUUC-Tca-121087	Theobroma cacao	80.83	6.00e-77	280.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence